Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Eyal, Z., Cimicata, G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L2 | 274 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P60430 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore P60430  Go to UniProtKB:  P60430 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60430 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L3 | 215 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW06 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW06  Go to UniProtKB:  Q2FW06 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW06 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L4 | 206 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW07 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW07  Go to UniProtKB:  Q2FW07 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW07 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L5 | 158 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW18 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW18  Go to UniProtKB:  Q2FW18 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW18 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L6 | 175 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW21 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW21  Go to UniProtKB:  Q2FW21 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW21 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L13 | 145 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW38 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW38  Go to UniProtKB:  Q2FW38 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW38 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L14 | 122 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW16 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW16  Go to UniProtKB:  Q2FW16 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW16 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L15 | 146 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P0A0F8 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore P0A0F8  Go to UniProtKB:  P0A0F8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A0F8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L16 | 137 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW13 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW13  Go to UniProtKB:  Q2FW13 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW13 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L17 | 120 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW33 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW33  Go to UniProtKB:  Q2FW33 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW33 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L18 | 119 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW22 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW22  Go to UniProtKB:  Q2FW22 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW22 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L19 | 116 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FZ42 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZ42  Go to UniProtKB:  Q2FZ42 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FZ42 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L20 | 116 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FXQ1 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FXQ1  Go to UniProtKB:  Q2FXQ1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FXQ1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L21 | 102 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FXS8 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FXS8  Go to UniProtKB:  Q2FXS8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FXS8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L22 | 112 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW11 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW11  Go to UniProtKB:  Q2FW11 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW11 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L23 | 89 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW08 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW08  Go to UniProtKB:  Q2FW08 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW08 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L24 | 103 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW17 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW17  Go to UniProtKB:  Q2FW17 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW17 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L25 | 94 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FJE0 (Staphylococcus aureus (strain USA300)) Explore Q2FJE0  Go to UniProtKB:  Q2FJE0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FJE0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L27 | 79 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FXT0 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FXT0  Go to UniProtKB:  Q2FXT0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FXT0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L28 | 49 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FZ60 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZ60  Go to UniProtKB:  Q2FZ60 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FZ60 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L29 | 67 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q2FW14 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW14  Go to UniProtKB:  Q2FW14 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW14 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L30 | 58 | Staphylococcus aureus | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P0A0G2 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore P0A0G2  Go to UniProtKB:  P0A0G2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A0G2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L32 | Y [auth Z] | 48 | Staphylococcus aureus | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q2FZF1 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZF1  Go to UniProtKB:  Q2FZF1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FZF1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L33 | Z [auth 1] | 47 | Staphylococcus aureus | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q2FYU6 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FYU6  Go to UniProtKB:  Q2FYU6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FYU6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L34 | AA [auth 2] | 43 | Staphylococcus aureus | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q2FUQ0 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FUQ0  Go to UniProtKB:  Q2FUQ0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FUQ0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L35 | BA [auth 3] | 64 | Staphylococcus aureus | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q2FXQ0 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FXQ0  Go to UniProtKB:  Q2FXQ0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FXQ0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 29 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L36 | CA [auth 4] | 37 | Staphylococcus aureus | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q2FW29 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FW29  Go to UniProtKB:  Q2FW29 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2FW29 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
23S ribosomal RNA | 2,923 | Staphylococcus aureus | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
5S ribosomal RNA | 115 | Staphylococcus aureus | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | AB [auth A] AC [auth A] AD [auth A] AE [auth A] AF [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |