6CV7

Mouse Protocadherin-15 Extracellular Cadherin Domains 1 through 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.692 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.169 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cis-dimeric architecture of Pcdh15 critical for mechanotransduction

Dionne, G.Qiu, X.Rapp, M.Liang, X.Zhao, B.Peng, G.Katsamba, P.S.Ahlsen, G.Rubinstein, R.Potter, C.S.Carragher, B.Honig, B.Mueller, U.

(2018) Neuron --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protocadherin-15
A
377Mus musculusMutation(s): 0 
Gene Names: Pcdh15
Find proteins for Q99PJ1 (Mus musculus)
Go to UniProtKB:  Q99PJ1
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MAN
Query on MAN

Download SDF File 
Download CCD File 
A
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.692 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.169 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 114.444α = 90.00
b = 114.444β = 90.00
c = 172.011γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release