6AWH | pdb_00006awh

Staphylococcus aureus Type II pantothenate kinase in complex with ATP and pantothenate analog Deoxy-MeO-N5Pan

PDB DOI: https://doi.org/10.2210/pdb6AWH/pdb

Classification: TRANSFERASE
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-09-05 Released: 2018-09-12
Deposition Author(s): Chen, Y., Antoshchenko, T., Strauss, E., Barnard, L., Huang, Y.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.226 (Depositor), 0.230 (DCC)
R-Value Work:
0.195 (Depositor), 0.200 (DCC)
R-Value Observed:
0.196 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Structure-based identification of uncompetitive inhibitors for Staphylococcus aureus pantothenate kinase.

Chen, Y., Antoshchenko, T., Strauss, E., Barnard, L., Huang, Y.H.

To be published.

Macromolecule Content

Total Structure Weight: 119.33 kDa
Atom Count: 8,978
Modeled Residue Count: 1,059
Deposited Residue Count: 1,064
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type II pantothenate kinase	A, B, C, D	266	Staphylococcus aureus	Mutation(s): 0 Gene Names: coaW, AYM28_11860, AYM37_11860, ERS072738_01917, ERS074020_01878, HMPREF3211_02599 EC: 2.7.1.33
UniProt
Find proteins for Q2FWC7 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FWC7 Go to UniProtKB: Q2FWC7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2FWC7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP Query on ATP Download Ideal Coordinates CCD File SDF format, chain M [auth D] SDF format, chain K [auth C] SDF format, chain G [auth B] SDF format, chain E [auth A] MOL2 format, chain M [auth D] MOL2 format, chain K [auth C] MOL2 format, chain G [auth B] MOL2 format, chain E [auth A] mmCIF format, chain M [auth D] mmCIF format, chain K [auth C] mmCIF format, chain G [auth B] mmCIF format, chain E [auth A]	E [auth A], G [auth B], K [auth C], M [auth D]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain K [auth C] Focus chain M [auth D] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain K [auth C] Focus chain M [auth D]
N7G (Subject of Investigation/LOI) Query on N7G Download Ideal Coordinates CCD File SDF format, chain O [auth D] SDF format, chain N [auth D] SDF format, chain I [auth B] SDF format, chain H [auth B] MOL2 format, chain O [auth D] MOL2 format, chain N [auth D] MOL2 format, chain I [auth B] MOL2 format, chain H [auth B] mmCIF format, chain O [auth D] mmCIF format, chain N [auth D] mmCIF format, chain I [auth B] mmCIF format, chain H [auth B]	H [auth B], I [auth B], N [auth D], O [auth D]	(2R)-2-hydroxy-N-{3-[(5-methoxypentyl)amino]-3-oxopropyl}-3,3-dimethylbutanamide C₁₅ H₃₀ N₂ O₄ NABPYAZEODOCAF-ZDUSSCGKSA-N		Interactions Focus chain H [auth B] Focus chain I [auth B] Focus chain N [auth D] Focus chain O [auth D] Interactions & Density Focus chain H [auth B] Focus chain I [auth B] Focus chain N [auth D] Focus chain O [auth D]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain P [auth D] SDF format, chain L [auth C] SDF format, chain J [auth B] SDF format, chain F [auth A] MOL2 format, chain P [auth D] MOL2 format, chain L [auth C] MOL2 format, chain J [auth B] MOL2 format, chain F [auth A] mmCIF format, chain P [auth D] mmCIF format, chain L [auth C] mmCIF format, chain J [auth B] mmCIF format, chain F [auth A]	F [auth A], J [auth B], L [auth C], P [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain J [auth B] Focus chain L [auth C] Focus chain P [auth D] Interactions & Density Focus chain F [auth A] Focus chain J [auth B] Focus chain L [auth C] Focus chain P [auth D]