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Staphylococcus aureus Type II pantothenate kinase in complex with ATP and pantothenate analog Deoxy-MeO-N5Pan
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289.15 23% PEG3350, 0.1 M ammonium sulfate, 0.1 M Bis-Tris, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.36 47.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.776 α = 90 b = 136.671 β = 90 c = 141.393 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2016-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 98.27 99.4 4.9 5.56 87345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 98.27 82792 4363 99.22 0.1964 0.1949 0.203 0.2256 0.233 RANDOM 29.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.82 3 -1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.503 r_dihedral_angle_4_deg 21.088 r_dihedral_angle_3_deg 14.612 r_dihedral_angle_1_deg 5.433 r_angle_other_deg 1.822 r_angle_refined_deg 1.509 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_bond_other_d 0.008 r_gen_planes_refined 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.503 r_dihedral_angle_4_deg 21.088 r_dihedral_angle_3_deg 14.612 r_dihedral_angle_1_deg 5.433 r_angle_other_deg 1.822 r_angle_refined_deg 1.509 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_bond_other_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8121 Nucleic Acid Atoms Solvent Atoms 635 Heterogen Atoms 212
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling MOLREP phasing