6ZC3

Small-molecule inhibitors of the PDZ domain of Dishevelled proteins interrupt Wnt signalling


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.169 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Small-molecule inhibitors of the PDZ domain of Dishevelled proteins interrupt Wnt signalling

Roske, Y.Heinemann, U.Oschkinat, H.Kamdem, N.Kovalskyy, D.Platonov, M.O.Balinskyi, O.M.Kreuchwig, A.Saupe, J.Fang, L.Diehl, A.Schmieder, P.Krause, G.Rademann, J.Birchmeier, W.

(2021) J Magn Reson (1969 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dishevelled, dsh homolog 3 (Drosophila), isoform CRA_b
A, B
95Homo sapiensMutation(s): 0 
Gene Names: DKFZp586M1622DVL3hCG_40299
UniProt & NIH Common Fund Data Resources
Find proteins for Q92997 (Homo sapiens)
Explore Q92997 
Go to UniProtKB:  Q92997
PHAROS:  Q92997
GTEx:  ENSG00000161202 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92997
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.169 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 87.276α = 90
b = 87.276β = 90
c = 57.844γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany806

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-23
    Type: Initial release
  • Version 1.1: 2022-07-20
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Refinement description