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Small-molecule inhibitors of the PDZ domain of Dishevelled proteins interrupt Wnt signalling
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F0A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.2 M ammonium sulphate, 0.1 M citric acid pH 5.0
Crystal Properties Matthews coefficient Solvent content 3.12 60.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.276 α = 90 b = 87.276 β = 90 c = 57.844 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2009-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 34.84 99.9 0.0055 19.1 5.7 29202
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.71 0.0774
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2F0A 1.67 34.84 27741 1461 99.92 0.1686 0.1666 0.1748 0.2078 0.2105 RANDOM 30.414
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.237 r_dihedral_angle_4_deg 21.441 r_dihedral_angle_3_deg 13.221 r_dihedral_angle_1_deg 7.574 r_angle_other_deg 1.062 r_angle_refined_deg 0.978 r_rigid_bond_restr 0.513 r_chiral_restr 0.027 r_gen_planes_refined 0.014 r_gen_planes_other 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.237 r_dihedral_angle_4_deg 21.441 r_dihedral_angle_3_deg 13.221 r_dihedral_angle_1_deg 7.574 r_angle_other_deg 1.062 r_angle_refined_deg 0.978 r_rigid_bond_restr 0.513 r_chiral_restr 0.027 r_gen_planes_refined 0.014 r_gen_planes_other 0.012 r_bond_refined_d 0.002 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1352 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 34
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing