6Z9M

Pseudoatomic model of the pre-fusion conformation of glycoprotein B of Herpes simplex virus 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The prefusion structure of herpes simplex virus glycoprotein B.

Vollmer, B.Prazak, V.Vasishtan, D.Jefferys, E.E.Hernandez-Duran, A.Vallbracht, M.Klupp, B.G.Mettenleiter, T.C.Backovic, M.Rey, F.A.Topf, M.Grunewald, K.

(2020) Sci Adv 6

  • DOI: https://doi.org/10.1126/sciadv.abc1726
  • Primary Citation of Related Structures:  
    6Z9M

  • PubMed Abstract: 

    Cell entry of enveloped viruses requires specialized viral proteins that mediate fusion with the host membrane by substantial structural rearrangements from a metastable pre- to a stable postfusion conformation. This metastability renders the herpes simplex virus 1 (HSV-1) fusion glycoprotein B (gB) highly unstable such that it readily converts into the postfusion form, thereby precluding structural elucidation of the pharmacologically relevant prefusion conformation. By identification of conserved sequence signatures and molecular dynamics simulations, we devised a mutation that stabilized this form. Functionally locking gB allowed the structural determination of its membrane-embedded prefusion conformation at sub-nanometer resolution and enabled the unambiguous fit of all ectodomains. The resulting pseudo-atomic model reveals a notable conservation of conformational domain rearrangements during fusion between HSV-1 gB and the vesicular stomatitis virus glycoprotein G, despite their very distant phylogeny. In combination with our comparative sequence-structure analysis, these findings suggest common fusogenic domain rearrangements in all class III viral fusion proteins.


  • Organizational Affiliation

    Oxford Particle Imaging Centre, Department of Structural Biology, Wellcome Centre Human Genetics, University of Oxford, Oxford, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein B
A, B, C
904Human alphaherpesvirus 1Mutation(s): 1 
Gene Names: UL27gBHHV1gp041
UniProt
Find proteins for P06437 (Human herpesvirus 1 (strain KOS))
Explore P06437 
Go to UniProtKB:  P06437
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06437
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONPEET
MODEL REFINEMENTMDFF

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyINST 152/772-1, 774-1, 775-1, 776-1 FUGG
Wellcome TrustUnited Kingdom209250/Z/17/Z, 107806/Z/15/Z, 203815/Z/16/A, 203141/Z/16/Z
Medical Research Council (MRC, United Kingdom)United KingdomMR/M019292/1, MR/R017875/1
Marie Sklodowska-Curie Actions, FragNET ITNEuropean UnionKGBVIFEF

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-07
    Type: Initial release
  • Version 1.1: 2020-10-14
    Changes: Database references