6YOZ

HiCel7B labelled with b-1,4-glucosyl cyclophellitol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report



Literature

Glycosylated cyclophellitol-derived activity-based probes and inhibitors for cellulases

de Boer, C.McGregor, N.G.S.Peterse, E.Schroeder, S.P.Florea, B.I.Jiang, J.Reijngoud, J.Ram, A.F.J.van Wezel, G.P.van der Marel, G.A.Codee, J.D.C.Overkleeft, H.S.Davies, G.J.

(2020) Chem Biol 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Endoglucanase 1AAA, BBB400Humicola insolensMutation(s): 0 
Gene Names: CEL7B
EC: 3.2.1.4
Find proteins for P56680 (Humicola insolens)
Explore P56680 
Go to UniProtKB:  P56680
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download CCD File 
AAA, BBB
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
YLL
Query on YLL

Download CCD File 
AAA, BBB
(1R,2S,3S,4S,5R,6R)-6-(HYDROXYMETHYL)CYCLOHEXANE-1,2,3,4,5-PENTOL
C7 H14 O6
QFYQIWDMMSKNFF-NYLBLOMBSA-N
 Ligand Interaction
BGC
Query on BGC

Download CCD File 
AAA, BBB
beta-D-glucopyranose
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
AAA, BBB
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
AAA, BBB
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ACM
Query on ACM

Download CCD File 
AAA
ACETAMIDE
C2 H5 N O
DLFVBJFMPXGRIB-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PCA
Query on PCA
AAA,BBBL-PEPTIDE LINKINGC5 H7 N O3GLN
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.202 
  • Space Group: P 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 102α = 90
b = 102β = 90
c = 278.85γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/R001162/1

Revision History 

  • Version 1.0: 2020-09-16
    Type: Initial release