6XY7

Human SHIP1 with magnesium and phosphate bound to the active site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.136 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Human SHIP1 with magnesium and phosphate bound to the active site

Bradshaw, W.J.Scacioc, A.Fernandez-Cid, A.Mckinley, G.Burgess-Brown, N.A.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Gileadi, O.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 AAA463Homo sapiensMutation(s): 0 
Gene Names: INPP5DSHIPSHIP1
EC: 3.1.3.86 (PDB Primary Data), 3.1.3.56 (PDB Primary Data), 3.1.3.36 (PDB Primary Data)
Find proteins for Q92835 (Homo sapiens)
Explore Q92835 
Go to UniProtKB:  Q92835
NIH Common Fund Data Resources
PHAROS:  Q92835
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PGE
Query on PGE

Download Ideal Coordinates CCD File 
AAA
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
PO4
Query on PO4

Download Ideal Coordinates CCD File 
AAA
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
DMS
Query on DMS

Download Ideal Coordinates CCD File 
AAA
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
AAA
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.136 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.5α = 90
b = 79.088β = 90
c = 89.255γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)United States1U54AG065187-01

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-26
    Type: Initial release
  • Version 1.1: 2020-11-11
    Changes: Source and taxonomy