Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 53.38 kDa 
• Atom Count: 4672 
• Modelled Residue Count: 460 
• Deposited Residue Count: 463 
• Unique protein chains: 1

6XY7

Human SHIP1 with magnesium and phosphate bound to the active site

• PDB DOI: 10.2210/pdb6XY7/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2020-01-29 Released: 2020-02-26 
• Deposition Author(s): Bradshaw, W.J., Scacioc, A., Fernandez-Cid, A., Mckinley, G., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.
• Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.09 Å
• R-Value Free: 0.159 
• R-Value Work: 0.136 

Literature

Human SHIP1 with magnesium and phosphate bound to the active site

Bradshaw, W.J., Scacioc, A., Fernandez-Cid, A., Mckinley, G., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1	A [auth AAA]	463	Homo sapiens	Mutation(s): 0  Gene Names: INPP5D, SHIP, SHIP1 EC: 3.1.3.86 (PDB Primary Data), 3.1.3.56 (PDB Primary Data), 3.1.3.36 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q92835 (Homo sapiens) Explore Q92835  Go to UniProtKB:  Q92835
PHAROS:  Q92835 GTEx:  ENSG00000168918

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PGE	G [auth AAA]	TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N
PO4 (Subject of Investigation/LOI)	C [auth AAA]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
DMS	D [auth AAA], E [auth AAA], F [auth AAA]	DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N
MG (Subject of Investigation/LOI)	B [auth AAA]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.09 Å
• R-Value Free: 0.159 
• R-Value Work: 0.136 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.5	α = 90
b = 79.088	β = 90
c = 89.255	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
STARANISO	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2020-01-29 
• Released Date: 2020-02-26 
Deposition Author(s): Bradshaw, W.J., Scacioc, A., Fernandez-Cid, A., Mckinley, G., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)	United States	1U54AG065187-01

Revision History  

• Version 1.0: 2020-02-26
  Type: Initial release
  
• Version 1.1: 2020-11-11
  Changes: Source and taxonomy