6WRS

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

  • Classification: RIBOSOME
  • Organism(s): Staphylococcus aureus
  • Mutation(s): Yes 

  • Deposited: 2020-04-30 Released: 2020-06-03 
  • Deposition Author(s): Belousoff, M.J.
  • Funding Organization(s): Department of Defense (DOD, United States)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report



Literature

CryoEM survey of oxazolodinone antibiotics in complex with the 50S subunit of the methicillin resistant Staphylococcus aureus ribosome

Wright, A.Deane-Alder, K.Marschall, E.Bamert, R.Venugopal, H.Lithgow, T.Lupton, D.Belousoff, M.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L21
D
105Staphylococcus aureusMutation(s): 0 
Find proteins for A0A0E0VQU6 (Staphylococcus aureus subsp. aureus 71193)
Go to UniProtKB:  A0A0E0VQU6

Find similar proteins by: Sequence  |  Structure

Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
uL22
E
117Staphylococcus aureusMutation(s): 1 
Find proteins for A7X5F6 (Staphylococcus aureus (strain Mu3 / ATCC 700698))
Go to UniProtKB:  A7X5F6

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
uL25
H
107Staphylococcus aureusMutation(s): 0 
Gene Names: rplYNCTC7878_00039
Find proteins for A0A2X2JWH5 (Staphylococcus aureus)
Go to UniProtKB:  A0A2X2JWH5

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L29
K
72Staphylococcus aureusMutation(s): 0 
Gene Names: rpmCCSC87_15460
Find proteins for A0A2S6DIY7 (Staphylococcus aureus)
Go to UniProtKB:  A0A2S6DIY7

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L34
P
50Staphylococcus aureusMutation(s): 0 
Find proteins for T1YD75 (Staphylococcus aureus subsp. aureus CN1)
Go to UniProtKB:  T1YD75

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L4
S
207Staphylococcus aureusMutation(s): 0 
Gene Names: rplDERS072840_01155GO677_05710SAMEA1469884_01255SAMEA1531680_01596SAMEA1531701_01537SAST44_02510SAST45_02495
Find proteins for A0A166DK89 (Staphylococcus aureus)
Go to UniProtKB:  A0A166DK89

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar proteins by: Sequence  |  Structure

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 25
MoleculeChainsLengthOrganism
23S rRNA12923Staphylococcus aureus

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 26
MoleculeChainsLengthOrganism
5S rRNA2115Staphylococcus aureus
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
U7V
Query on U7V

Download CCD File 
1
Tedizolid
C17 H15 F N6 O3
XFALPSLJIHVRKE-GFCCVEGCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2020-04-30 
  • Released Date: 2020-06-03 
  • Deposition Author(s): Belousoff, M.J.

Funding OrganizationLocationGrant Number
Department of Defense (DOD, United States)United StatesW81XWH1910126

Revision History 

  • Version 1.0: 2020-06-03
    Type: Initial release