6WQN

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

  • Classification: RIBOSOME
  • Organism(s): Staphylococcus aureus
  • Mutation(s): Yes 

  • Deposited: 2020-04-29 Released: 2020-06-03 
  • Deposition Author(s): Belousoff, M.J.
  • Funding Organization(s): Department of Defense (DOD, United States)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report



Literature

CryoEM survey of oxazolodinone antibiotics in complex with the 50S subunit of the methicillin resistant Staphylococcus aureus ribosome

Wright, A.Deane-Alder, K.Marschall, E.Bamert, R.Venugopal, H.Lithgow, T.Lupton, D.Belousoff, M.J.

To be published.

Macromolecules

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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L22E117Staphylococcus aureusMutation(s): 1 
Find proteins for Q2FW11 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L23F91Staphylococcus aureusMutation(s): 1 
Find proteins for Q2FW08 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FW08
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L24G105Staphylococcus aureusMutation(s): 1 
Find proteins for Q2FW17 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FW17
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L28J62Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FZ60 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FZ60
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L29K72Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW14 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L3L217Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW06 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L30M58Staphylococcus aureusMutation(s): 0 
Find proteins for P0A0G2 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L32N57Staphylococcus aureusMutation(s): 1 
Find proteins for Q2FZF1 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FZF1
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L33O49Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FY22 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L35Q65Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FXQ0 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L36R37Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW29 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L4S207Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW07 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L13V145Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW38 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FW38
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L15X146Staphylococcus aureusMutation(s): 0 
Find proteins for P0A0F8 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L16Y144Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW13 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L18a119Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW22 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L19A116Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FZ42 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FZ42
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L34P50Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FUQ0 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L2B277Staphylococcus aureusMutation(s): 0 
Find proteins for P60430 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L14W122Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW16 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L17Z122Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FW33 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L27I85Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FXT0 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L20C118Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FXQ1 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FXQ1
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L21D105Staphylococcus aureusMutation(s): 0 
Find proteins for Q2FXS8 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FXS8
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L25H107Staphylococcus aureusMutation(s): 0 
Find proteins for Q2G0S0 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2G0S0 
Go to UniProtKB:  Q2G0S0
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Entity ID: 25
MoleculeChainsLengthOrganismImage
23S rRNA12923Staphylococcus aureus
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Entity ID: 26
MoleculeChainsLengthOrganismImage
5S rRNA2115Staphylococcus aureus
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZC0
Query on ZC0

Download CCD File 
1
Contezolid
C18 H15 F3 N4 O4
SULYVXZZUMRQAX-NSHDSACASA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2020-04-29 
  • Released Date: 2020-06-03 
  • Deposition Author(s): Belousoff, M.J.

Funding OrganizationLocationGrant Number
Department of Defense (DOD, United States)United StatesW81XWH1910126

Revision History 

  • Version 1.0: 2020-06-03
    Type: Initial release