Download MendeleyFBXW11-SKP1 in complex with a pSer33/pSer37 Beta-Catenin peptide
Ivanochko, D., Edwards, A.M., Bountra, C., Arrowsmith, C.H., Boettcher, J.To be published.
6WNX
FBXW11-SKP1 in complex with a pSer33/pSer37 Beta-Catenin peptide
- PDB DOI: 10.2210/pdb6WNX/pdb
- Classification: LIGASE
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2020-04-23 Released: 2020-05-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.251
- R-Value Work: 0.206
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| F-box/WD repeat-containing protein 11 | A, D, G | 429 | Homo sapiens | Mutation(s): 0 Gene Names: FBXW11, BTRCP2, FBW1B, FBXW1B, KIAA0696 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UKB1 (Homo sapiens) Explore Q9UKB1 Go to UniProtKB: Q9UKB1 | |||||
PHAROS: Q9UKB1 GTEx: ENSG00000072803 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UKB1 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| S-phase kinase-associated protein 1 | B, E, H | 145 | Homo sapiens | Mutation(s): 0 Gene Names: SKP1, EMC19, OCP2, SKP1A, TCEB1L |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P63208 (Homo sapiens) Explore P63208 Go to UniProtKB: P63208 | |||||
PHAROS: P63208 GTEx: ENSG00000113558 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P63208 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Catenin beta-1 | C, F, I | 9 | Homo sapiens | Mutation(s): 0 Gene Names: CTNNB1, CTNNB, OK/SW-cl.35, PRO2286 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P35222 (Homo sapiens) Explore P35222 Go to UniProtKB: P35222 | |||||
PHAROS: P35222 GTEx: ENSG00000168036 | |||||
Entity Groups | |||||
| UniProt Group | P35222 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | J [auth A], K [auth A], L [auth A], N [auth B], O [auth D], | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | M [auth A], P [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | C, F, I | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.251
- R-Value Work: 0.206
- R-Value Observed: 0.208
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 119.732 | α = 90 |
| b = 81.866 | β = 92.92 |
| c = 133.198 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2020-04-23
- Released Date: 2020-05-06 Deposition Author(s): Ivanochko, D., Edwards, A.M., Bountra, C., Arrowsmith, C.H., Boettcher, J., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2020-05-06
Type: Initial release
