Macromolecule Content

Total Structure Weight: 201.11 kDa
Atom Count: 13651
Residue Count: 1659
Unique protein chains: 3

6WNX

FBXW11-SKP1 in complex with a pSer33/pSer37 Beta-Catenin peptide

DOI: 10.2210/pdb6WNX/pdb

Classification: LIGASE
Organism(s): Homo sapiens
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2020-04-23 Released: 2020-05-06
Deposition Author(s): Ivanochko, D., Edwards, A.M., Bountra, C., Arrowsmith, C.H., Boettcher, J., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.251
R-Value Work: 0.206
R-Value Observed: 0.208

wwPDB Validation 3D Report Full Report

Literature

FBXW11-SKP1 in complex with a pSer33/pSer37 Beta-Catenin peptide

Ivanochko, D., Edwards, A.M., Bountra, C., Arrowsmith, C.H., Boettcher, J.

To be published.

Macromolecules

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(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
F-box/WD repeat-containing protein 11	A, D, G	429	Homo sapiens	Mutation(s): 0 Gene Names: FBXW11, BTRCP2, FBW1B, FBXW1B, KIAA0696
Find proteins for Q9UKB1 (Homo sapiens) Explore Q9UKB1 Go to UniProtKB: Q9UKB1
NIH Common Fund Data Resources
PHAROS: Q9UKB1 GTEx: ENSG00000072803
Protein Feature View Expand
Reference Sequence

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(by identity cutoff) | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
S-phase kinase-associated protein 1	B, E, H	145	Homo sapiens	Mutation(s): 0 Gene Names: SKP1, EMC19, OCP2, SKP1A, TCEB1L
Find proteins for P63208 (Homo sapiens) Explore P63208 Go to UniProtKB: P63208
NIH Common Fund Data Resources
PHAROS: P63208 GTEx: ENSG00000113558
Protein Feature View Expand
Reference Sequence

Find similar proteins by: Sequence | Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Catenin beta-1	C, F, I	9	Homo sapiens	Mutation(s): 0 Gene Names: CTNNB1, CTNNB, OK/SW-cl.35, PRO2286
Find proteins for P35222 (Homo sapiens) Explore P35222 Go to UniProtKB: P35222
NIH Common Fund Data Resources
PHAROS: P35222 GTEx: ENSG00000168036
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain J [A] SDF format, chain K [A] SDF format, chain L [A] SDF format, chain N [B] SDF format, chain O [D] SDF format, chain Q [G] MOL2 format, chain J [A] MOL2 format, chain K [A] MOL2 format, chain L [A] MOL2 format, chain N [B] MOL2 format, chain O [D] MOL2 format, chain Q [G]	A, B, D, G	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain M [A] SDF format, chain P [D] MOL2 format, chain M [A] MOL2 format, chain P [D]	A, D	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
SEP Query on SEP	C,F,I	L-PEPTIDE LINKING	C₃ H₈ N O₆ P		SER

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.251
R-Value Work: 0.206
R-Value Observed: 0.208
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.732	α = 90
b = 81.866	β = 92.92
c = 133.198	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2020-04-23
Released Date: 2020-05-06

Deposition Author(s):

Arrowsmith, C.H.

Structural Genomics Consortium (SGC)

Revision History

Version 1.0: 2020-05-06
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.