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FBXW11-SKP1 in complex with a pSer33/pSer37 Beta-Catenin peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P22
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.12M Ethylene Glycol,
0.1M Morpheus Buffer 1 pH 6.5, 30.0% GOL_P4K
Crystal Properties Matthews coefficient Solvent content 3.25 62.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.732 α = 90 b = 81.866 β = 92.92 c = 133.198 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00004 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 133.02 98.9 0.223 0.243 0.095 0.984 5.7 6.4 78568
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 99.8 1.478 1.614 0.637 0.289 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1p22 2.5 133.02 52614 2632 61.88 0.2081 0.206 0.2508 0.2327 RANDOM 60.619
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 -0.76 -1.05 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.349 r_dihedral_angle_3_deg 18.757 r_dihedral_angle_4_deg 18.416 r_dihedral_angle_1_deg 8.034 r_angle_refined_deg 1.545 r_angle_other_deg 1.273 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.349 r_dihedral_angle_3_deg 18.757 r_dihedral_angle_4_deg 18.416 r_dihedral_angle_1_deg 8.034 r_angle_refined_deg 1.545 r_angle_other_deg 1.273 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13320 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction