6WJM

The crystal structure beta-lactamase from Desulfarculus baarsii DSM 2075


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.00 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.123 
  • R-Value Observed: 0.123 

wwPDB Validation 3D Report Full Report



Literature

The crystal structure beta-lactamase from Desulfarculus baarsii DSM 2075

Chang, C.Welk, L.Endres, M.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A
298Desulfarculus baarsii DSM 2075Mutation(s): 0 
Gene Names: Deba_2488
EC: 3.5.2.6
Find proteins for E1QJV5 (Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14))
Go to UniProtKB:  E1QJV5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CIT
Query on CIT

Download CCD File 
A
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
ALA
Query on ALA

Download CCD File 
A
ALANINE
C3 H7 N O2
QNAYBMKLOCPYGJ-REOHCLBHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.00 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.123 
  • R-Value Observed: 0.123 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.722α = 90
b = 73.46β = 110.3
c = 42.923γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SBC-Collectdata collection
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-04-22
    Type: Initial release