6WHL

The crystal structure of a beta-lactamase from Legionella pneumophila str. Paris


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.163 
  • R-Value Observed: 0.166 

wwPDB Validation 3D Report Full Report



Literature

The crystal structure of a beta-lactamase from Legionella pneumophila str. Paris

Tan, K.Wu, R.Endres, M.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B, C, D, E, F, G, H, I, J, K, L
249Legionella pneumophila str. ParisMutation(s): 0 
Gene Names: blaNCTC12000_01749
EC: 3.5.2.6
Find proteins for A0A378KDC5 (Legionella pneumophila)
Go to UniProtKB:  A0A378KDC5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download CCD File 
A, B, C, E, F, G, H, I, J, K, L
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
KCX
Query on KCX
A,B,C,D,E,F,G,H,I,J,K,L
L-PEPTIDE LINKINGC7 H14 N2 O4LYS
MSE
Query on MSE
A,B,C,D,E,F,G,H,I,J,K,L
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.163 
  • R-Value Observed: 0.166 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.222α = 90
b = 178.196β = 97.038
c = 143.749γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
PHENIXrefinement
HKL-3000data scaling
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700060C

Revision History 

  • Version 1.0: 2020-04-22
    Type: Initial release