Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: homology

Macromolecule Content

• Total Structure Weight: 18.82 kDa 
• Atom Count: 1161 
• Residue Count: 129 
• Unique protein chains: 1
• Unique nucleic acid chains: 1

6WE0

Wheat dwarf virus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site

• DOI: 10.2210/pdb6WE0/pdb
• NDB: 6WE0

• Classification: REPLICATION/DNA
• Organism(s): Wheat dwarf virus
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2020-04-01 Released: 2020-12-16 
• Deposition Author(s): Tompkins, K., Litzau, L.A., Shi, K., Nelson, A., Evans III, R.L., Gordon, W.R.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.216 
• R-Value Work: 0.192 
• R-Value Observed: 0.193 

Literature

Wheat dwarf virus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site

Tompkins, K.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Replication-associated protein	A	137	Wheat dwarf virus	Mutation(s): 1  Gene Names: repA EC: 3.1.21
Find proteins for A7KQY4 (Wheat dwarf virus - [Hebei Shijiazhuang]) Explore A7KQY4  Go to UniProtKB:  A7KQY4

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*AP*AP*TP*AP*TP*TP*AP*CP*C)-3')	C	10	Wheat dwarf virus

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MN	A, C	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.216 
• R-Value Work: 0.192 
• R-Value Observed: 0.193 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.572	α = 90
b = 50.01	β = 90
c = 73.441	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
Coot	model building
PHASER	phasing
XDS	data reduction
XDS	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2020-04-01 
• Released Date: 2020-12-16 
Deposition Author(s): Tompkins, K., Litzau, L.A., Shi, K., Nelson, A., Evans III, R.L., Gordon, W.R.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM119483
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM118047

Revision History 

• Version 1.0: 2020-12-16
  Type: Initial release