Wheat dwarf virus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site
Tompkins, K.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Replication-associated protein | A | 137 | Wheat dwarf virus | Mutation(s): 1  Gene Names: repA EC: 3.1.21 | ![]() |
Find proteins for A7KQY4 (Wheat dwarf virus - [Hebei Shijiazhuang]) Explore A7KQY4  Go to UniProtKB:  A7KQY4 | |||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*TP*AP*AP*TP*AP*TP*TP*AP*CP*C)-3') | C | 10 | Wheat dwarf virus | ![]() |
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MN Query on MN | A, C | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 45.572 | α = 90 |
b = 50.01 | β = 90 |
c = 73.441 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PDB_EXTRACT | data extraction |
Coot | model building |
PHASER | phasing |
XDS | data reduction |
XDS | data scaling |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM119483 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM118047 |