Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site
Tompkins, K.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ATP-dependent helicase Rep | A, D, G | 115 | Porcine circovirus 2 | Mutation(s): 0  Gene Names: Rep | ![]() |
Find proteins for A0A060L113 (Porcine circovirus 2) Explore A0A060L113  Go to UniProtKB:  A0A060L113 | |||||
Protein Feature ViewExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*TP*AP*GP*TP*AP*TP*TP*AP*CP*C)-3') | C, F, I, J | 10 | Porcine circovirus 2 | ![]() |
Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | G | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
MN Query on MN | A, D, G | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 99.527 | α = 90 |
b = 99.527 | β = 90 |
c = 73.695 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM119483 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM118047 |