6WDZ

Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report



Literature

Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site

Tompkins, K.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
ATP-dependent helicase RepADG115Porcine circovirus 2Mutation(s): 0 
Gene Names: Rep
Find proteins for A0A060L113 (Porcine circovirus 2)
Explore A0A060L113 
Go to UniProtKB:  A0A060L113
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*TP*AP*GP*TP*AP*TP*TP*AP*CP*C)-3')C, F, I, J10Porcine circovirus 2
    Small Molecules
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.03 Å
    • R-Value Free: 0.280 
    • R-Value Work: 0.229 
    • R-Value Observed: 0.232 
    • Space Group: P 64
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 99.527α = 90
    b = 99.527β = 90
    c = 73.695γ = 120
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    PDB_EXTRACTdata extraction
    HKL-3000data reduction
    HKL-3000data scaling
    PHENIXphasing
    Cootmodel building

    Structure Validation

    View Full Validation Report



    Entry History & Funding Information

    Deposition Data


    Funding OrganizationLocationGrant Number
    National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM119483
    National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM118047

    Revision History 

    • Version 1.0: 2020-12-16
      Type: Initial release