6VSR

Crystal structure of macaque anti-HIV-1 antibody RM20F


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.

Cottrell, C.A.van Schooten, J.Bowman, C.A.Yuan, M.Oyen, D.Shin, M.Morpurgo, R.van der Woude, P.van Breemen, M.Torres, J.L.Patel, R.Gross, J.Sewall, L.M.Copps, J.Ozorowski, G.Nogal, B.Sok, D.Rakasz, E.G.Labranche, C.Vigdorovich, V.Christley, S.Carnathan, D.G.Sather, D.N.Montefiori, D.Silvestri, G.Burton, D.R.Moore, J.P.Wilson, I.A.Sanders, R.W.Ward, A.B.van Gils, M.J.

(2020) PLoS Pathog 16: e1008753-e1008753

  • DOI: 10.1371/journal.ppat.1008753
  • Primary Citation of Related Structures:  
    6VLR, 6VN0, 6VO1, 6VOR, 6VOS, 6VSR

  • PubMed Abstract: 
  • The induction of broad and potent immunity by vaccines is the key focus of research efforts aimed at protecting against HIV-1 infection. Soluble native-like HIV-1 envelope glycoproteins have shown promise as vaccine candidates as they can induce potent autologous neutralizing responses in rabbits and non-human primates ...

    The induction of broad and potent immunity by vaccines is the key focus of research efforts aimed at protecting against HIV-1 infection. Soluble native-like HIV-1 envelope glycoproteins have shown promise as vaccine candidates as they can induce potent autologous neutralizing responses in rabbits and non-human primates. In this study, monoclonal antibodies were isolated and characterized from rhesus macaques immunized with the BG505 SOSIP.664 trimer to better understand vaccine-induced antibody responses. Our studies reveal a diverse landscape of antibodies recognizing immunodominant strain-specific epitopes and non-neutralizing neo-epitopes. Additionally, we isolated a subset of mAbs against an epitope cluster at the gp120-gp41 interface that recognize the highly conserved fusion peptide and the glycan at position 88 and have characteristics akin to several human-derived broadly neutralizing antibodies.


    Organizational Affiliation

    Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
RM20F Fab Heavy ChainA227Macaca mulattaMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
RM20F Fab Light ChainB213Macaca mulattaMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.459α = 90
b = 75.646β = 90
c = 115.068γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesUM1 AI100663
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesP01 AI110657

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-16
    Type: Initial release