Download Mendeley1.6 Angstrom Resolution Crystal Structure of endoglucanase from Komagataeibacter sucrofermentans
Wu, R., Kim, Y., Jedrzejczak, R., Joachimiak, A.To be published.
6VC5
1.6 Angstrom Resolution Crystal Structure of endoglucanase from Komagataeibacter sucrofermentans
- PDB DOI: https://doi.org/10.2210/pdb6VC5/pdb
- Classification: HYDROLASE
- Organism(s): Komagataeibacter sucrofermentans
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2019-12-20 Released: 2020-12-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.176
- R-Value Work: 0.155
- R-Value Observed: 0.156
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Currently 6VC5 does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endoglucanase | 321 | Komagataeibacter sucrofermentans | Mutation(s): 0 Gene Names: CMCase EC: 3.2.1.4 |  | |
UniProt | |||||
Find proteins for O82857 (Komagataeibacter sucrofermentans) Explore O82857 Go to UniProtKB: O82857 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O82857 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A], D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.176
- R-Value Work: 0.155
- R-Value Observed: 0.156
- Space Group: I 4
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.52 | α = 90 |
| b = 120.52 | β = 90 |
| c = 47.588 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Structure Validation
Currently 6VC5 does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2020-12-23 Deposition Author(s): Wu, R., Kim, Y., Jedrzrjczak, R., Joachimiak, A.
Revision History (Full details and data files)
- Version 1.0: 2020-12-23
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
