6V8S

Crystal structure of Ara h 8.0201


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.234 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report

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This is version 1.1 of the entry. See complete history


Literature

Crystal structure of Ara h 8.0201

Pote, S.Offermann, L.R.Hurlburt, B.K.McBride, J.K.Chruszcz, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ara h 8 allergen isoform
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
153Arachis hypogaeaMutation(s): 0 
Gene Names: Ahy_Scaffold6g108211
UniProt
Find proteins for B0YIU5 (Arachis hypogaea)
Explore B0YIU5 
Go to UniProtKB:  B0YIU5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB0YIU5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
2AN (Subject of Investigation/LOI)
Query on 2AN

Download Ideal Coordinates CCD File 
AA [auth C]
AB [auth F]
AC [auth J]
AD [auth N]
BA [auth C]
AA [auth C],
AB [auth F],
AC [auth J],
AD [auth N],
BA [auth C],
BB [auth F],
BC [auth J],
BD [auth N],
CA [auth C],
CB [auth F],
CC [auth J],
CD [auth O],
DA [auth C],
DB [auth G],
DC [auth J],
DD [auth O],
EA [auth C],
EB [auth G],
EC [auth K],
ED [auth O],
FA [auth C],
FB [auth G],
FC [auth K],
FD [auth O],
GA [auth C],
GB [auth G],
GC [auth K],
GD [auth P],
HA [auth C],
HB [auth G],
HC [auth K],
HD [auth P],
IA [auth D],
IB [auth G],
IC [auth K],
ID [auth P],
JA [auth D],
JB [auth H],
JC [auth K],
JD [auth P],
KA [auth D],
KB [auth H],
KC [auth K],
KD [auth P],
LA [auth D],
LB [auth H],
LC [auth L],
LD [auth P],
MA [auth D],
MB [auth H],
MC [auth L],
MD [auth P],
NA [auth D],
NB [auth H],
NC [auth L],
ND [auth P],
OA [auth E],
OB [auth H],
OC [auth L],
OD [auth P],
PA [auth E],
PB [auth H],
PC [auth M],
Q [auth A],
QA [auth E],
QB [auth H],
QC [auth M],
R [auth A],
RA [auth E],
RB [auth H],
RC [auth M],
S [auth A],
SA [auth E],
SC [auth M],
T [auth A],
TA [auth E],
TB [auth I],
TC [auth M],
U [auth A],
UA [auth E],
UB [auth I],
UC [auth M],
V [auth B],
VA [auth F],
VB [auth I],
VC [auth M],
W [auth B],
WA [auth F],
WB [auth I],
WC [auth M],
X [auth B],
XA [auth F],
XB [auth I],
XC [auth M],
Y [auth B],
YA [auth F],
YB [auth J],
YC [auth N],
Z [auth C],
ZA [auth F],
ZB [auth J],
ZC [auth N]
8-ANILINO-1-NAPHTHALENE SULFONATE
C16 H13 N O3 S
FWEOQOXTVHGIFQ-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
SB [auth H]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.234 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.161α = 94.13
b = 90.027β = 106.91
c = 94.245γ = 97.23
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing
Cootmodel building

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release
  • Version 1.1: 2023-10-11
    Changes: Data collection, Database references, Refinement description