6V2D

Crystal Structure of chromodomain of CDYL2 in complex with inhibitor UNC3866


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of chromodomain of CDYL2 in complex with inhibitor UNC3866

Liu, Y.Tempel, W.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Min, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Chromodomain Y-like protein 2
A, C, E, G, I, K
64Homo sapiensMutation(s): 0 
Gene Names: CDYL2
Find proteins for Q8N8U2 (Homo sapiens)
Go to Gene View: CDYL2
Go to UniProtKB:  Q8N8U2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
UNC3866
J, L, B, D, F, H
6N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, C, E, G, I, J, K
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Biologically Interesting Molecules 1 Unique
IDChainsNameType/Class2D Diagram3D Interactions
PRD_002208
Query on PRD_002208
B,D,F,H,J,LUNC3866Oligopeptide / Inhibitor

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Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 45.979α = 90.00
b = 83.835β = 90.00
c = 115.288γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
XDSdata reduction
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-12-25
    Type: Initial release