6UM1

Structure of M-6-P/IGFII Receptor at pH 4.5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Marked structural rearrangement of mannose 6-phosphate/IGF2 receptor at different pH environments

Wang, R.Qi, X.Schmiege, P.Coutavas, E.Li, X.

(2020) Sci Adv 6: eaaz1466


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cation-independent mannose-6-phosphate receptor
A
2499Bos taurusMutation(s): 0 
Gene Names: IGF2R (M6P)
Find proteins for P08169 (Bos taurus)
Go to Gene View: IGF2R
Go to UniProtKB:  P08169
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BMA
Query on BMA

Download SDF File 
Download CCD File 
A
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-10-08 
  • Released Date: 2020-02-26 
  • Deposition Author(s): Wang, R., Qi, X., Li, X.

Revision History 

  • Version 1.0: 2020-02-26
    Type: Initial release