6UM1

Structure of M-6-P/IGFII Receptor at pH 4.5


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.732
r_dihedral_angle_3_deg15.908
r_dihedral_angle_4_deg15.549
r_dihedral_angle_1_deg10.285
r_long_range_B_refined4.213
r_long_range_B_other4.213
r_mcangle_it2.364
r_mcangle_other2.363
r_angle_refined_deg1.562
r_scangle_other1.515
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.732
r_dihedral_angle_3_deg15.908
r_dihedral_angle_4_deg15.549
r_dihedral_angle_1_deg10.285
r_long_range_B_refined4.213
r_long_range_B_other4.213
r_mcangle_it2.364
r_mcangle_other2.363
r_angle_refined_deg1.562
r_scangle_other1.515
r_mcbond_it1.254
r_mcbond_other1.254
r_angle_other_deg1.231
r_scbond_it0.75
r_scbond_other0.75
r_chiral_restr0.065
r_bond_other_d0.009
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
IGFIIR
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles128789
Reported Resolution (Å)3.46
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)80
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeDARK FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE