6UHC

CryoEM structure of human Arp2/3 complex with bound NPFs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structure of NPF-bound human Arp2/3 complex and activation mechanism.

Zimmet, A.Van Eeuwen, T.Boczkowska, M.Rebowski, G.Murakami, K.Dominguez, R.

(2020) Sci Adv 6: eaaz7651-eaaz7651


Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-related protein 3A418Homo sapiensMutation(s): 0 
Gene Names: ACTR3ARP3
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Find proteins for P61158 (Homo sapiens)
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PHAROS:  P61158
GTEx:  ENSG00000115091 
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UniProt GroupP61158
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-related protein 2B394Homo sapiensMutation(s): 0 
Gene Names: ACTR2ARP2
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Find proteins for P61160 (Homo sapiens)
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PHAROS:  P61160
GTEx:  ENSG00000138071 
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 1BC372Homo sapiensMutation(s): 0 
Gene Names: ARPC1BARC41
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PHAROS:  O15143
GTEx:  ENSG00000130429 
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 2D300Homo sapiensMutation(s): 0 
Gene Names: ARPC2ARC34PRO2446
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GTEx:  ENSG00000163466 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 3E203Homo sapiensMutation(s): 0 
Gene Names: ARPC3ARC21
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GTEx:  ENSG00000111229 
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 4F168Homo sapiensMutation(s): 0 
Gene Names: ARPC4ARC20
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GTEx:  ENSG00000241553 
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 5G151Homo sapiensMutation(s): 0 
Gene Names: ARPC5ARC16
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Find proteins for O15511 (Homo sapiens)
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GTEx:  ENSG00000162704 
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Neural Wiskott-Aldrich syndrome proteinH, I501Mus musculusMutation(s): 0 
Gene Names: Wasl
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Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download Ideal Coordinates CCD File 
K [auth A],
M [auth B]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
J [auth A],
L [auth B]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-GM07391
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32-GM008275
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesF31-HL146077

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-01
    Type: Initial release