6U7L

2.75 Angstrom Crystal Structure of Galactarate Dehydratase from Escherichia coli.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 

wwPDB Validation   3D Report Full Report



Literature

2.75 Angstrom Crystal Structure of Galactarate Dehydratase from Escherichia coli.

Minasov, G.Shuvalova, L.Wawrzak, Z.Dubrovska, I.Kiryukhina, O.Endres, M.Satchell, K.J.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Galactarate dehydratase (L-threo-forming)AB526Escherichia coli K-12Mutation(s): 0 
Gene Names: garDyhaGb3128JW3097
EC: 4.2.1.42
Find proteins for P39829 (Escherichia coli (strain K12))
Explore P39829 
Go to UniProtKB:  P39829
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Galactarate dehydratase (L-threo-forming)CD526Escherichia coli K-12Mutation(s): 0 
Gene Names: garDyhaGb3128JW3097
EC: 4.2.1.42
Find proteins for P39829 (Escherichia coli (strain K12))
Explore P39829 
Go to UniProtKB:  P39829
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
A, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
PHD
Query on PHD
A,BL-PEPTIDE LINKINGC4 H8 N O7 PASP
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.462α = 90
b = 167.574β = 103.97
c = 117.065γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-11-06
    Type: Initial release