6U7L

2.75 Angstrom Crystal Structure of Galactarate Dehydratase from Escherichia coli.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

2.75 Angstrom Crystal Structure of Galactarate Dehydratase from Escherichia coli.

Minasov, G.Shuvalova, L.Wawrzak, Z.Dubrovska, I.Kiryukhina, O.Endres, M.Satchell, K.J.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Galactarate dehydratase (L-threo-forming)
A, B
526Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: garD (yhaG)
EC: 4.2.1.42
Find proteins for P39829 (Escherichia coli (strain K12))
Go to UniProtKB:  P39829
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Galactarate dehydratase (L-threo-forming)
C, D
526Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: garD (yhaG)
EC: 4.2.1.42
Find proteins for P39829 (Escherichia coli (strain K12))
Go to UniProtKB:  P39829
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
PHD
Query on PHD
A, B
L-PEPTIDE LINKINGC4 H8 N O7 PASP
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.206 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 58.462α = 90.00
b = 167.574β = 103.97
c = 117.065γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-3000data reduction
REFMACrefinement
PHENIXphasing
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-11-06
    Type: Initial release