6U0M

Structure of the S. cerevisiae replicative helicase CMG in complex with a forked DNA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report



Literature

DNA unwinding mechanism of a eukaryotic replicative CMG helicase.

Yuan, Z.Georgescu, R.Bai, L.Zhang, D.Li, H.O'Donnell, M.E.

(2020) Nat Commun 11: 688


Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF1 A208Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PSF1YDR013WPZA208YD8119.18
Find proteins for Q12488 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF2 B198Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PSF2YJL072CHRF213J1086
Find proteins for P40359 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF3 C191Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PSF3YOL146W
Find proteins for Q12146 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication complex GINS protein SLD5 D291Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SLD5YDR489W
Find proteins for Q03406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Cell division control protein 45 E646Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CDC45SLD4YLR103CL8004.11
Find proteins for Q08032 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication licensing factor MCM2 2664Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: MCM2YBL023CYBL0438
EC: 3.6.4.12
Find proteins for P29469 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication licensing factor MCM3 3722Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: MCM3YEL032WSYGP-ORF23
EC: 3.6.4.12
Find proteins for P24279 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication licensing factor MCM4 4753Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: MCM4CDC54HCD21YPR019WYP9531.13
EC: 3.6.4.12
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Minichromosome maintenance protein 5 5670Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: MCM5CDC46YLR274WL9328.1
EC: 3.6.4.12
Find proteins for P29496 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication licensing factor MCM6 6667Saccharomyces cerevisiaeMutation(s): 0 
EC: 3.6.4.12
Find proteins for P53091 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
DNA replication licensing factor MCM7 7729Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: MCM7CDC47YBR202WYBR1441
EC: 3.6.4.12
Find proteins for P38132 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 12
MoleculeChainsLengthOrganismImage
DNA (26-MER)F23Saccharomyces cerevisiae
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  • Entity ID: 13
    MoleculeChainsLengthOrganismImage
    DNA (15-MER)G15Saccharomyces cerevisiae
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    ATP
    Query on ATP

    Download Ideal Coordinates CCD File 
    2, 3, 5
    ADENOSINE-5'-TRIPHOSPHATE
    C10 H16 N5 O13 P3
    ZKHQWZAMYRWXGA-KQYNXXCUSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: ELECTRON MICROSCOPY
    • Resolution: 3.90 Å
    • Aggregation State: PARTICLE 
    • Reconstruction Method: SINGLE PARTICLE 

    Structure Validation

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    Entry History & Funding Information

    Deposition Data


    Funding OrganizationLocationGrant Number
    National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesGM111472
    National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesOD12272
    National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesGM45436

    Revision History 

    • Version 1.0: 2020-03-25
      Type: Initial release
    • Version 2.0: 2020-04-22
      Type: Coordinate replacement
      Reason: Atomic clashes
      Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary