6T1A

Structure of mosquitocidal Cyt1Aa protoxin obtained by Serial Femtosecond Crystallography on in vivo grown crystals at pH 10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.294 
  • R-Value Work: 0.243 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Serial femtosecond crystallography on in vivo-grown crystals drives elucidation of mosquitocidal Cyt1Aa bioactivation cascade.

Tetreau, G.Banneville, A.S.Andreeva, E.A.Brewster, A.S.Hunter, M.S.Sierra, R.G.Teulon, J.M.Young, I.D.Burke, N.Grunewald, T.A.Beaudouin, J.Snigireva, I.Fernandez-Luna, M.T.Burt, A.Park, H.W.Signor, L.Bafna, J.A.Sadir, R.Fenel, D.Boeri-Erba, E.Bacia, M.Zala, N.Laporte, F.Despres, L.Weik, M.Boutet, S.Rosenthal, M.Coquelle, N.Burghammer, M.Cascio, D.Sawaya, M.R.Winterhalter, M.Gratton, E.Gutsche, I.Federici, B.Pellequer, J.L.Sauter, N.K.Colletier, J.P.

(2020) Nat Commun 11: 1153-1153

  • DOI: https://doi.org/10.1038/s41467-020-14894-w
  • Primary Citation of Related Structures:  
    6T14, 6T19, 6T1A, 6T1C

  • PubMed Abstract: 

    Cyt1Aa is the one of four crystalline protoxins produced by mosquitocidal bacterium Bacillus thuringiensis israelensis (Bti) that has been shown to delay the evolution of insect resistance in the field. Limiting our understanding of Bti efficacy and the path to improved toxicity and spectrum has been ignorance of how Cyt1Aa crystallizes in vivo and of its mechanism of toxicity. Here, we use serial femtosecond crystallography to determine the Cyt1Aa protoxin structure from sub-micron-sized crystals produced in Bti. Structures determined under various pH/redox conditions illuminate the role played by previously uncharacterized disulfide-bridge and domain-swapped interfaces from crystal formation in Bti to dissolution in the larval mosquito midgut. Biochemical, toxicological and biophysical methods enable the deconvolution of key steps in the Cyt1Aa bioactivation cascade. We additionally show that the size, shape, production yield, pH sensitivity and toxicity of Cyt1Aa crystals grown in Bti can be controlled by single atom substitution.


  • Organizational Affiliation

    Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, F-38000, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Type-1Aa cytolytic delta-endotoxinA [auth BBB]249Bacillus thuringiensis serovar israelensisMutation(s): 0 
Gene Names: cyt1AacytA
UniProt
Find proteins for P0A382 (Bacillus thuringiensis subsp. israelensis)
Explore P0A382 
Go to UniProtKB:  P0A382
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A382
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download Ideal Coordinates CCD File 
B [auth BBB]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.294 
  • R-Value Work: 0.243 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.446α = 90
b = 65.446β = 90
c = 165.451γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
DIALSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-17-CE11-0018-01
French National Research AgencyFranceANR-2018-CE11-0005-02

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-14
    Type: Initial release
  • Version 1.1: 2021-04-28
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Database references, Refinement description