6SKP

OXA-10_IPM. Structural insight to the enhanced carbapenem efficiency of OXA-655 compared to OXA-10.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.891 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural insight to the enhanced carbapenem efficiency of OXA-655 compared to OXA-10.

Leiros, H.-K.S.Thomassen, A.M.Samuelsen, O.Flach, C.-F.Kotsakis, S.D.Larsson, D.G.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B
266Escherichia coliMutation(s): 0 
Gene Names: blaoxa-10 (blaOXA-10, oxa-10)
EC: 3.5.2.6
Find proteins for Q7BNC2 (Escherichia coli)
Go to UniProtKB:  Q7BNC2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
IM2
Query on IM2

Download SDF File 
Download CCD File 
A, B
(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carboxylic acid
IMIPENEM, open form; N-FORMIMIDOYL-THIENAMYCINE, open form
C12 H19 N3 O4 S
UACUABDJLSUFFC-IWSPIJDZSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
B
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
KCX
Query on KCX
A, B
L-PEPTIDE LINKINGC7 H14 N2 O4LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.891 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.216 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 94.933α = 90.00
b = 124.794β = 90.00
c = 48.480γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
PHENIXrefinement
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-08-16 
  • Released Date: 2019-09-18 
  • Deposition Author(s): Leiros, H.-K.S.

Revision History 

  • Version 1.0: 2019-09-18
    Type: Initial release