6SJA

Structure of HPV16 E6 oncoprotein in complex with IRF3 LxxLL motif


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report



Literature

Deciphering de molecular and structural interaction between IRF3 and HPV16 E6

Poirson, J.Suarez, I.P.Cousido-Siah, A.Forster, A.Chebaro, Y.Mitschler, A.Straub, M.Altschuh, D.Podjarny, A.Trave, G.Masson, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Maltose/maltodextrin-binding periplasmic protein,Interferon regulatory factor 3
A
383Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 3 
Gene Names: malEb4034JW3994
Find proteins for P0AEX9 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AEX9
Find proteins for Q14653 (Homo sapiens)
Go to UniProtKB:  Q14653
NIH Common Fund Data Resources
PHAROS  Q14653

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Protein E6
B
153Human papillomavirus type 16Mutation(s): 5 
Gene Names: E6
Find proteins for P03126 (Human papillomavirus type 16)
Go to UniProtKB:  P03126
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GLC
Query on GLC

Download CCD File 
A
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.189 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.659α = 90
b = 132.87β = 90
c = 43.025γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French League Against CancerFranceequipe labellisee 2015 and fellowship AB
National Institutes of Health/National Cancer InstituteUnited StatesR01CA134737
Foundation for Medical ResearchFrancefellowship to IPS

Revision History 

  • Version 1.0: 2019-09-04
    Type: Initial release