6SJA
Structure of HPV16 E6 oncoprotein in complex with IRF3 LxxLL motif
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SBP_bac_1_C | e6sjaA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C | ECOD (1.6) |
A | SBP_bac_1_N_1 | e6sjaA1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
B | E6 | e6sjaB2 | A: few secondary structure elements | X: E6 C-terminal domain-like (From Topology) | H: E6 C-terminal domain-like (From Topology) | T: E6 C-terminal domain-like | F: E6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.30.240.40 | Alpha Beta | 2-Layer Sandwich | CRO Repressor | E6 early regulatory protein | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
PF00518 | Early Protein (E6) (E6) | Early Protein (E6) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006061 | Solute-binding family 1, conserved site | Conserved Site | |
IPR006060 | Maltose/Cyclodextrin ABC transporter, substrate-binding protein | Family | |
IPR006059 | Bacterial-type extracellular solute-binding protein | Family | |
IPR019817 | Interferon regulatory factor, conserved site | Conserved Site | |
IPR019471 | Interferon regulatory factor-3 | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR017855 | SMAD-like domain superfamily | Homologous Superfamily | |
IPR001346 | Interferon regulatory factor, DNA-binding domain | Domain | |
IPR008984 | SMAD/FHA domain superfamily | Homologous Superfamily | |
IPR038575 | E6 superfamily | Homologous Superfamily | |
IPR001334 | E6 early regulatory protein | Family |