6S4M | pdb_00006s4m

Crystal structure of the human organic anion transporter MFSD10 (TETRAN)

• PDB DOI: https://doi.org/10.2210/pdb6S4M/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 
• Membrane Protein: Yes  OPMPDBTM


• Deposited: 2019-06-28 Released: 2020-05-13 
• Deposition Author(s): Pascoa, T.C., Pike, A.C.W., Bushell, S.R., Quigley, A., Chu, A., Mukhopadhyay, S.M.M., Shrestha, L., Venkaya, S., Chalk, R., Burgess-Brown, N.A., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.258 (Depositor), 0.262 (DCC) 
• R-Value Work: 
  0.209 (Depositor), 0.217 (DCC) 
• R-Value Observed: 
  0.211 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the human organic anion transporter TETRAN (MFSD10)

Pascoa, T.C., Pike, A.C.W., Bushell, S.R., Quigley, A., Chu, A., Mukhopadhyay, S.M.M., Shrestha, L., Venkaya, S., Chalk, R., Burgess-Brown, N.A., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 48.94 kDa 
• Atom Count: 3,289 
• Modeled Residue Count: 426 
• Deposited Residue Count: 451 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major facilitator superfamily domain-containing protein 10	A	451	Homo sapiens	Mutation(s): 0  Gene Names: MFSD10, TETRAN Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q14728 (Homo sapiens) Explore Q14728  Go to UniProtKB:  Q14728
PHAROS:  Q14728 GTEx:  ENSG00000109736

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
OLC	B [auth A], C [auth A]	(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate C21 H40 O4 RZRNAYUHWVFMIP-GDCKJWNLSA-N
CIT	D [auth A]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.258 (Depositor), 0.262 (DCC) 
• R-Value Work:  0.209 (Depositor), 0.217 (DCC) 
• R-Value Observed: 0.211 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.994	α = 90
b = 70.375	β = 115.45
c = 63.44	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2020-05-13 
Deposition Author(s): Pascoa, T.C., Pike, A.C.W., Bushell, S.R., Quigley, A., Chu, A., Mukhopadhyay, S.M.M., Shrestha, L., Venkaya, S., Chalk, R., Burgess-Brown, N.A., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	--

Revision History  

• Version 1.0: 2020-05-13
  Type: Initial release
  
• Version 2.0: 2021-07-14
  Type: Coordinate replacement
  Reason: Ligand identity
  Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Refinement description, Structure summary
• Version 2.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description