Download MendeleyKinase Scaffold Repurposing in the Public Domain
Sorrell, F.J., Henderson, S.H., Elkins, J.M., Ward, S.To be published.
6S14
Crystal Structure of DYRK1A with small molecule inhibitor
- PDB DOI: 10.2210/pdb6S14/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-06-18 Released: 2019-06-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 Å
- R-Value Free: 0.163
- R-Value Work: 0.150
- R-Value Observed: 0.151
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dual specificity tyrosine-phosphorylation-regulated kinase 1A | A | 361 | Homo sapiens | Mutation(s): 0 Gene Names: DYRK1A, DYRK, MNB, MNBH EC: 2.7.12.1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13627 (Homo sapiens) Explore Q13627 Go to UniProtKB: Q13627 | |||||
PHAROS: Q13627 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13627 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| KQW (Subject of Investigation/LOI) Query on KQW | H [auth A] | ~{N}-cyclopropyl-~{N}-methyl-4-pyrazolo[1,5-b]pyridazin-3-yl-pyrimidin-2-amine C14 H14 N6 OAIXSJCARVACKE-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PTR Query on PTR | A | L-PEPTIDE LINKING | C9 H12 N O6 P |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 Å
- R-Value Free: 0.163
- R-Value Work: 0.150
- R-Value Observed: 0.151
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.47 | α = 90 |
| b = 70.3 | β = 118.04 |
| c = 68.53 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| Aimless | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2019-06-26 Deposition Author(s): Sorrell, F.J., Henderson, S.H., Redondo, C., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Elkins, J.M.
Revision History (Full details and data files)
- Version 1.0: 2019-06-26
Type: Initial release - Version 1.1: 2019-08-21
Changes: Data collection
