6RYA

Structure of Dup1 mutant H67A:Ubiquitin complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Regulation of phosphoribosyl-linked serine ubiquitination by deubiquitinases DupA and DupB

Donghyuk, S.Ivan, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Septation initiation protein
A, C, E
343Legionella pneumophila subsp. pneumophilaMutation(s): 0 
Find proteins for A0A3A6VNK6 (Legionella pneumophila subsp. pneumophila)
Go to UniProtKB:  A0A3A6VNK6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Polyubiquitin-C
B, D, F
76Homo sapiensMutation(s): 0 
Gene Names: UBC
Find proteins for P0CG48 (Homo sapiens)
Go to Gene View: UBC
Go to UniProtKB:  P0CG48
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.209 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 116.328α = 90.00
b = 67.136β = 90.00
c = 182.753γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
XDSdata scaling
REFMACrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-06-10 
  • Released Date: 2019-11-13 
  • Deposition Author(s): Donghyuk, S., Ivan, D.

Funding OrganizationLocationGrant Number
German Research FoundationGermanySFB1177
German Research FoundationGermanySFB902

Revision History 

  • Version 1.0: 2019-11-13
    Type: Initial release