6RJM

Complex structure of virulence factor SghA and its hydrolysis product glucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.112 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Agrobacteria reprogram virulence gene expression by controlled release of host conjugated signalscontrolled release of host conjugated signals

Wang, C.Ye, F.Z.Chang, C.Q.Liu, X.L.Wang, J.H.Wang, J.P.Fu, Q.Q.Zhou, J.N.Chen, S.H.Gao, Y.G.Zhang, L.H.

(2019) Proc.Natl.Acad.Sci.USA --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-glucosidase
A, B
490Agrobacterium tumefaciens A6Mutation(s): 0 
Gene Names: sghA
EC: 3.2.1.21
Find proteins for A0A2I4PGZ0 (Agrobacterium tumefaciens A6)
Go to UniProtKB:  A0A2I4PGZ0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GLC
Query on GLC

Download SDF File 
Download CCD File 
A, B
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.112 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.181 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 59.035α = 90.00
b = 84.590β = 90.00
c = 184.732γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
XDSdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (Singapore)SingaporeNRF-RF2009-RF001-267
National Basic Research Program of China(973 Program)China2015CB150600

Revision History 

  • Version 1.0: 2019-10-09
    Type: Initial release