6QZP

High-resolution cryo-EM structure of the human 80S ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history

Literature

Visualization of chemical modifications in the human 80S ribosome structure.

Natchiar, S.K.Myasnikov, A.G.Kratzat, H.Hazemann, I.Klaholz, B.P.

(2017) Nature 551: 472-477

  • DOI: 10.1038/nature24482
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Chemical modifications of human ribosomal RNA (rRNA) are introduced during biogenesis and have been implicated in the dysregulation of protein synthesis, as is found in cancer and other diseases. However, their role in this phenomenon is unknown. Her ...

    Chemical modifications of human ribosomal RNA (rRNA) are introduced during biogenesis and have been implicated in the dysregulation of protein synthesis, as is found in cancer and other diseases. However, their role in this phenomenon is unknown. Here we visualize more than 130 individual rRNA modifications in the three-dimensional structure of the human ribosome, explaining their structural and functional roles. In addition to a small number of universally conserved sites, we identify many eukaryote- or human-specific modifications and unique sites that form an extended shell in comparison to bacterial ribosomes, and which stabilize the RNA. Several of the modifications are associated with the binding sites of three ribosome-targeting antibiotics, or are associated with degenerate states in cancer, such as keto alkylations on nucleotide bases reminiscent of specialized ribosomes. This high-resolution structure of the human 80S ribosome paves the way towards understanding the role of epigenetic rRNA modifications in human diseases and suggests new possibilities for designing selective inhibitors and therapeutic drugs.


    Organizational Affiliation

    Centre for Integrative Biology (CBI), Department of Integrated Structural Biology, IGBMC, CNRS, Inserm, Université de Strasbourg, 1 rue Laurent Fries, 67404 Illkirch, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L8
LA
248Homo sapiensMutation(s): 0 
Gene Names: RPL8
Find proteins for P62917 (Homo sapiens)
Go to Gene View: RPL8
Go to UniProtKB:  P62917
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L3
LB
402Homo sapiensMutation(s): 0 
Gene Names: RPL3
Find proteins for P39023 (Homo sapiens)
Go to Gene View: RPL3
Go to UniProtKB:  P39023
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L4
LC
368Homo sapiensMutation(s): 0 
Gene Names: RPL4 (RPL1)
Find proteins for P36578 (Homo sapiens)
Go to Gene View: RPL4
Go to UniProtKB:  P36578
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L5
LD
293Homo sapiensMutation(s): 0 
Gene Names: RPL5
Find proteins for P46777 (Homo sapiens)
Go to Gene View: RPL5
Go to UniProtKB:  P46777
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L6
LE
236Homo sapiensMutation(s): 0 
Gene Names: RPL6 (TXREB1)
Find proteins for Q02878 (Homo sapiens)
Go to Gene View: RPL6
Go to UniProtKB:  Q02878
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L7
LF
225Homo sapiensMutation(s): 0 
Gene Names: RPL7
Find proteins for P18124 (Homo sapiens)
Go to Gene View: RPL7
Go to UniProtKB:  P18124
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L7a
LG
241Homo sapiensMutation(s): 0 
Gene Names: RPL7A (SURF-3, SURF3)
Find proteins for P62424 (Homo sapiens)
Go to Gene View: RPL7A
Go to UniProtKB:  P62424
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L9
LH
190Homo sapiensMutation(s): 0 
Gene Names: RPL9, RPL9P7, RPL9P8, RPL9P9
Find proteins for P32969 (Homo sapiens)
Go to Gene View: RPL9
Go to UniProtKB:  P32969
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L10-like
LI
213Homo sapiensMutation(s): 0 
Gene Names: RPL10L
Find proteins for Q96L21 (Homo sapiens)
Go to Gene View: RPL10L
Go to UniProtKB:  Q96L21
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L11
LJ
176Homo sapiensMutation(s): 0 
Gene Names: RPL11
Find proteins for P62913 (Homo sapiens)
Go to Gene View: RPL11
Go to UniProtKB:  P62913
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13
LL
210Homo sapiensMutation(s): 0 
Gene Names: RPL13 (BBC1)
Find proteins for P26373 (Homo sapiens)
Go to Gene View: RPL13
Go to UniProtKB:  P26373
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L14
LM
139Homo sapiensMutation(s): 0 
Gene Names: RPL14
Find proteins for P50914 (Homo sapiens)
Go to Gene View: RPL14
Go to UniProtKB:  P50914
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L15
LN
203Homo sapiensMutation(s): 0 
Gene Names: RPL15 (EC45)
Find proteins for P61313 (Homo sapiens)
Go to Gene View: RPL15
Go to UniProtKB:  P61313
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13a
LO
201Homo sapiensMutation(s): 0 
Gene Names: RPL13A
Find proteins for P40429 (Homo sapiens)
Go to Gene View: RPL13A
Go to UniProtKB:  P40429
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L17
LP
153Homo sapiensMutation(s): 0 
Gene Names: RPL17
Find proteins for P18621 (Homo sapiens)
Go to Gene View: RPL17
Go to UniProtKB:  P18621
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L18
LQ
187Homo sapiensMutation(s): 0 
Gene Names: RPL18
Find proteins for Q07020 (Homo sapiens)
Go to Gene View: RPL18
Go to UniProtKB:  Q07020
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L19
LR
187Homo sapiensMutation(s): 0 
Gene Names: RPL19
Find proteins for P84098 (Homo sapiens)
Go to Gene View: RPL19
Go to UniProtKB:  P84098
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L18a
LS
175Homo sapiensMutation(s): 0 
Gene Names: RPL18A
Find proteins for Q02543 (Homo sapiens)
Go to Gene View: RPL18A
Go to UniProtKB:  Q02543
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L21
LT
159Homo sapiensMutation(s): 0 
Gene Names: RPL21
Find proteins for P46778 (Homo sapiens)
Go to Gene View: RPL21
Go to UniProtKB:  P46778
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L22
LU
101Homo sapiensMutation(s): 0 
Gene Names: RPL22
Find proteins for P35268 (Homo sapiens)
Go to Gene View: RPL22
Go to UniProtKB:  P35268
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L23
LV
131Homo sapiensMutation(s): 0 
Gene Names: RPL23
Find proteins for P62829 (Homo sapiens)
Go to Gene View: RPL23
Go to UniProtKB:  P62829
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L24
LW
124Homo sapiensMutation(s): 0 
Gene Names: RPL24
Find proteins for P83731 (Homo sapiens)
Go to Gene View: RPL24
Go to UniProtKB:  P83731
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L23a
LX
120Homo sapiensMutation(s): 0 
Gene Names: RPL23A
Find proteins for P62750 (Homo sapiens)
Go to Gene View: RPL23A
Go to UniProtKB:  P62750
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L26
LY
134Homo sapiensMutation(s): 0 
Gene Names: RPL26
Find proteins for P61254 (Homo sapiens)
Go to Gene View: RPL26
Go to UniProtKB:  P61254
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27
LZ
135Homo sapiensMutation(s): 0 
Gene Names: RPL27
Find proteins for P61353 (Homo sapiens)
Go to Gene View: RPL27
Go to UniProtKB:  P61353
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27a
La
147Homo sapiensMutation(s): 0 
Gene Names: RPL27A
Find proteins for P46776 (Homo sapiens)
Go to Gene View: RPL27A
Go to UniProtKB:  P46776
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L29
Lb
109Homo sapiensMutation(s): 0 
Gene Names: RPL29
Find proteins for P47914 (Homo sapiens)
Go to Gene View: RPL29
Go to UniProtKB:  P47914
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L30
Lc
98Homo sapiensMutation(s): 0 
Gene Names: RPL30
Find proteins for P62888 (Homo sapiens)
Go to Gene View: RPL30
Go to UniProtKB:  P62888
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L31
Ld
107Homo sapiensMutation(s): 0 
Gene Names: RPL31
Find proteins for P62899 (Homo sapiens)
Go to Gene View: RPL31
Go to UniProtKB:  P62899
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L32
Le
128Homo sapiensMutation(s): 0 
Gene Names: RPL32
Find proteins for P62910 (Homo sapiens)
Go to Gene View: RPL32
Go to UniProtKB:  P62910
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L35a
Lf
109Homo sapiensMutation(s): 0 
Gene Names: RPL35A
Find proteins for P18077 (Homo sapiens)
Go to Gene View: RPL35A
Go to UniProtKB:  P18077
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L34
Lg
114Homo sapiensMutation(s): 0 
Gene Names: RPL34
Find proteins for P49207 (Homo sapiens)
Go to Gene View: RPL34
Go to UniProtKB:  P49207
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L35
Lh
122Homo sapiensMutation(s): 0 
Gene Names: RPL35
Find proteins for P42766 (Homo sapiens)
Go to Gene View: RPL35
Go to UniProtKB:  P42766
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36
Li
102Homo sapiensMutation(s): 0 
Gene Names: RPL36
Find proteins for Q9Y3U8 (Homo sapiens)
Go to Gene View: RPL36
Go to UniProtKB:  Q9Y3U8
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L37
Lj
86Homo sapiensMutation(s): 0 
Gene Names: RPL37
Find proteins for P61927 (Homo sapiens)
Go to Gene View: RPL37
Go to UniProtKB:  P61927
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L38
Lk
69Homo sapiensMutation(s): 0 
Gene Names: RPL38
Find proteins for P63173 (Homo sapiens)
Go to Gene View: RPL38
Go to UniProtKB:  P63173
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L39
Ll
50Homo sapiensMutation(s): 0 
Gene Names: RPL39
Find proteins for P62891 (Homo sapiens)
Go to Gene View: RPL39
Go to UniProtKB:  P62891
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-60S ribosomal protein L40
Lm
52Homo sapiensMutation(s): 0 
Gene Names: UBA52 (UBCEP2)
Find proteins for P62987 (Homo sapiens)
Go to Gene View: UBA52
Go to UniProtKB:  P62987
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L41
Ln
24Homo sapiensMutation(s): 0 
Gene Names: RPL41
Find proteins for P62945 (Homo sapiens)
Go to Gene View: RPL41
Go to UniProtKB:  P62945
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36a
Lo
105Homo sapiensMutation(s): 0 
Gene Names: RPL36A (RPL44)
Find proteins for P83881 (Homo sapiens)
Go to Gene View: RPL36A
Go to UniProtKB:  P83881
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L37a
Lp
91Homo sapiensMutation(s): 0 
Gene Names: RPL37A
Find proteins for P61513 (Homo sapiens)
Go to Gene View: RPL37A
Go to UniProtKB:  P61513
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L28
Lr
125Homo sapiensMutation(s): 0 
Gene Names: RPL28
Find proteins for P46779 (Homo sapiens)
Go to Gene View: RPL28
Go to UniProtKB:  P46779
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L10a
Lz
217Homo sapiensMutation(s): 0 
Gene Names: RPL10A (NEDD6)
Find proteins for P62906 (Homo sapiens)
Go to Gene View: RPL10A
Go to UniProtKB:  P62906
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein SA
SA
221Homo sapiensMutation(s): 0 
Gene Names: RPSA (LAMBR, LAMR1)
Find proteins for P08865 (Homo sapiens)
Go to Gene View: RPSA
Go to UniProtKB:  P08865
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3a
SB
214Homo sapiensMutation(s): 0 
Gene Names: RPS3A (FTE1, MFTL)
Find proteins for P61247 (Homo sapiens)
Go to Gene View: RPS3A
Go to UniProtKB:  P61247
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3
SD
227Homo sapiensMutation(s): 0 
Gene Names: RPS3
EC: 4.2.99.18
Find proteins for P23396 (Homo sapiens)
Go to Gene View: RPS3
Go to UniProtKB:  P23396
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S4, X isoform
SE
262Homo sapiensMutation(s): 0 
Gene Names: RPS4X (CCG2, RPS4, SCAR)
Find proteins for P62701 (Homo sapiens)
Go to Gene View: RPS4X
Go to UniProtKB:  P62701
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S5
SF
189Homo sapiensMutation(s): 0 
Gene Names: RPS5
Find proteins for P46782 (Homo sapiens)
Go to Gene View: RPS5
Go to UniProtKB:  P46782
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S7
SH
186Homo sapiensMutation(s): 0 
Gene Names: RPS7
Find proteins for P62081 (Homo sapiens)
Go to Gene View: RPS7
Go to UniProtKB:  P62081
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S8
SI
206Homo sapiensMutation(s): 0 
Gene Names: RPS8
Find proteins for P62241 (Homo sapiens)
Go to Gene View: RPS8
Go to UniProtKB:  P62241
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S10
SK
98Homo sapiensMutation(s): 0 
Gene Names: RPS10
Find proteins for P46783 (Homo sapiens)
Go to Gene View: RPS10
Go to UniProtKB:  P46783
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S11
SL
153Homo sapiensMutation(s): 0 
Gene Names: RPS11
Find proteins for P62280 (Homo sapiens)
Go to Gene View: RPS11
Go to UniProtKB:  P62280
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S15
SP
127Homo sapiensMutation(s): 0 
Gene Names: RPS15 (RIG)
Find proteins for P62841 (Homo sapiens)
Go to Gene View: RPS15
Go to UniProtKB:  P62841
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S16
SQ
141Homo sapiensMutation(s): 0 
Gene Names: RPS16
Find proteins for P62249 (Homo sapiens)
Go to Gene View: RPS16
Go to UniProtKB:  P62249
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S17
SR
135Homo sapiensMutation(s): 0 
Gene Names: RPS17 (RPS17L)
Find proteins for P08708 (Homo sapiens)
Go to Gene View: RPS17
Go to UniProtKB:  P08708
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S18
SS
145Homo sapiensMutation(s): 0 
Gene Names: RPS18 (D6S218E)
Find proteins for P62269 (Homo sapiens)
Go to Gene View: RPS18
Go to UniProtKB:  P62269
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S19
ST
143Homo sapiensMutation(s): 0 
Gene Names: RPS19
Find proteins for P39019 (Homo sapiens)
Go to Gene View: RPS19
Go to UniProtKB:  P39019
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S20
SU
103Homo sapiensMutation(s): 0 
Gene Names: RPS20
Find proteins for P60866 (Homo sapiens)
Go to Gene View: RPS20
Go to UniProtKB:  P60866
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S21
SV
83Homo sapiensMutation(s): 0 
Gene Names: RPS21
Find proteins for P63220 (Homo sapiens)
Go to Gene View: RPS21
Go to UniProtKB:  P63220
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S23
SX
141Homo sapiensMutation(s): 0 
Gene Names: RPS23
Find proteins for P62266 (Homo sapiens)
Go to Gene View: RPS23
Go to UniProtKB:  P62266
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S26
Sa
102Homo sapiensMutation(s): 0 
Gene Names: RPS26
Find proteins for P62854 (Homo sapiens)
Go to Gene View: RPS26
Go to UniProtKB:  P62854
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S28
Sc
64Homo sapiensMutation(s): 0 
Gene Names: RPS28
Find proteins for P62857 (Homo sapiens)
Go to Gene View: RPS28
Go to UniProtKB:  P62857
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S29
Sd
55Homo sapiensMutation(s): 0 
Gene Names: RPS29
Find proteins for P62273 (Homo sapiens)
Go to Gene View: RPS29
Go to UniProtKB:  P62273
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
Receptor of activated protein C kinase 1
Sg
313Homo sapiensMutation(s): 0 
Gene Names: RACK1 (GNB2L1)
Find proteins for P63244 (Homo sapiens)
Go to Gene View: RACK1
Go to UniProtKB:  P63244
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S2
SC
222Homo sapiensMutation(s): 0 
Gene Names: RPS2 (RPS4)
Find proteins for P15880 (Homo sapiens)
Go to Gene View: RPS2
Go to UniProtKB:  P15880
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S6
SG
237Homo sapiensMutation(s): 0 
Gene Names: RPS6
Find proteins for P62753 (Homo sapiens)
Go to Gene View: RPS6
Go to UniProtKB:  P62753
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S9
SJ
185Homo sapiensMutation(s): 0 
Gene Names: RPS9
Find proteins for P46781 (Homo sapiens)
Go to Gene View: RPS9
Go to UniProtKB:  P46781
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S12
SM
122Homo sapiensMutation(s): 0 
Gene Names: RPS12
Find proteins for P25398 (Homo sapiens)
Go to Gene View: RPS12
Go to UniProtKB:  P25398
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S13
SN
150Homo sapiensMutation(s): 0 
Gene Names: RPS13
Find proteins for P62277 (Homo sapiens)
Go to Gene View: RPS13
Go to UniProtKB:  P62277
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S14
SO
140Homo sapiensMutation(s): 0 
Gene Names: RPS14
Find proteins for P62263 (Homo sapiens)
Go to Gene View: RPS14
Go to UniProtKB:  P62263
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S15a
SW
129Homo sapiensMutation(s): 0 
Gene Names: RPS15A
Find proteins for P62244 (Homo sapiens)
Go to Gene View: RPS15A
Go to UniProtKB:  P62244
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S24
SY
131Homo sapiensMutation(s): 0 
Gene Names: RPS24
Find proteins for P62847 (Homo sapiens)
Go to Gene View: RPS24
Go to UniProtKB:  P62847
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S25
SZ
75Homo sapiensMutation(s): 0 
Gene Names: RPS25
Find proteins for P62851 (Homo sapiens)
Go to Gene View: RPS25
Go to UniProtKB:  P62851
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27
Sb
83Homo sapiensMutation(s): 0 
Gene Names: RPS27 (MPS1)
Find proteins for P42677 (Homo sapiens)
Go to Gene View: RPS27
Go to UniProtKB:  P42677
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S30
Se
58Homo sapiensMutation(s): 0 
Gene Names: FAU
Find proteins for P62861 (Homo sapiens)
Go to Gene View: FAU
Go to UniProtKB:  P62861
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-40S ribosomal protein S27a
Sf
67Homo sapiensMutation(s): 0 
Gene Names: RPS27A (UBA80, UBCEP1)
Find proteins for P62979 (Homo sapiens)
Go to Gene View: RPS27A
Go to UniProtKB:  P62979
Entity ID: 1
MoleculeChainsLengthOrganism
28S rRNA (3773-MER)L53773Homo sapiens
Entity ID: 2
MoleculeChainsLengthOrganism
5S rRNA (120-MER)L7120Homo sapiens
Entity ID: 3
MoleculeChainsLengthOrganism
5.8S rRNA (156-MER)L8156Homo sapiens
Entity ID: 47
MoleculeChainsLengthOrganism
18S rRNA (1740-MER)S21740Homo sapiens
Entity ID: 48
MoleculeChainsLengthOrganism
E site tRNA (75-MER)S675Homo sapiens
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
Lg, Lj, Lm, Lo, Lp, Sa, Sd, Sf
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
HMT
Query on HMT

Download SDF File 
Download CCD File 
L5
(3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine
Homoharringtonine, Cephalotaxine, [3(R)]-4-methyl 2-hydroxy-2-(4-hydroxy-4-methylpentyl)butanedioate
C29 H39 N O9
HYFHYPWGAURHIV-JFIAXGOJSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
L5, L7, L8, LA, Le, Lf, LI, LN, LP, LS, LV, S2, SF
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
HYG
Query on HYG

Download SDF File 
Download CCD File 
S2
HYGROMYCIN B
HYGROMIX, ANTIHELMYCIN, HYDROMYCIN B, DESTOMYSIN, ANTIBIOTIC A-396-II
C20 H37 N3 O13
GRRNUXAQVGOGFE-WRWUMOMGSA-N
 Ligand Interaction
Modified Residues  19 Unique
IDChainsTypeFormula2D DiagramParent
A2M
Query on A2M
L5, S2
RNA LINKINGC11 H16 N5 O7 PA
PSU
Query on PSU
L5, S2
RNA LINKINGC9 H13 N2 O9 PU
5MC
Query on 5MC
L5, S2
RNA LINKINGC10 H16 N3 O8 PC
6MZ
Query on 6MZ
L5, S2
RNA LINKINGC11 H16 N5 O7 PA
OMU
Query on OMU
L5, L8, S2
RNA LINKINGC10 H15 N2 O9 PU
M7A
Query on M7A
S2
RNA linkingC11 H18 N5 O7 PA
MLZ
Query on MLZ
LC, Lm
L-PEPTIDE LINKINGC7 H16 N2 O2LYS
JMH
Query on JMH
L5, S2
RNA linkingC10 H16 N3 O8 PC
B8N
Query on B8N
S2
RNA linkingC14 H22 N3 O11 P

--

1MA
Query on 1MA
L5
RNA LINKINGC11 H16 N5 O7 PA
OMC
Query on OMC
L5, S2
RNA LINKINGC10 H16 N3 O8 PC
MA6
Query on MA6
S2
RNA LINKINGC12 H18 N5 O7 PA
2MG
Query on 2MG
L5
RNA LINKINGC11 H16 N5 O8 PG
UR3
Query on UR3
L5, S2
RNA LINKINGC10 H15 N2 O9 PU
OMG
Query on OMG
L5, S2
RNA LINKINGC11 H16 N5 O8 PG
5MU
Query on 5MU
L5, S2
RNA LINKINGC10 H15 N2 O9 PU
B8T
Query on B8T
L5
RNA linkingC10 H16 N3 O8 PC
B8H
Query on B8H
L5
RNA linkingC10 H15 N2 O9 PU
4AC
Query on 4AC
S2
RNA LINKINGC11 H16 N3 O9 P

--

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-04-24
    Type: Initial release
  • Version 2.0: 2019-05-15
    Type: Data collection, Polymer sequence
  • Version 2.1: 2019-05-29
    Type: Data collection, Database references