6Q2U

Structure of Cytochrome C4 from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.181 

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This is version 1.2 of the entry. See complete history


Literature

Structure and redox properties of the diheme electron carrier cytochrome c4from Pseudomonas aeruginosa.

Carpenter, J.M.Zhong, F.Ragusa, M.J.Louro, R.O.Hogan, D.A.Pletneva, E.V.

(2019) J Inorg Biochem 203: 110889-110889

  • DOI: https://doi.org/10.1016/j.jinorgbio.2019.110889
  • Primary Citation of Related Structures:  
    6Q2U

  • PubMed Abstract: 

    At low oxygen concentrations, respiration of Pseudomonas aeruginosa (Pa) and other bacteria relies on activity of cytochrome cbb 3 oxidases. A diheme cytochrome c 4 (cyt c 4 ) donates electrons to Pa cbb 3 oxidases to enable oxygen reduction and proton pumping by these enzymes. Given the importance of this redox pathway for bacterial pathogenesis, both cyt c 4 and cbb 3 oxidase are potential targets for new antibacterial strategies. The structural information about these two proteins, however, is scarce, and functional insights for Pa and other bacteria have been primarily drawn from analyses of the analogous system from Pseudomonas stutzeri (Ps). Herein, we describe characterization of structural and redox properties of cyt c 4 from Pa. The crystal structure of Pa cyt c 4 has revealed that this protein is organized in two monoheme domains. The interdomain interface is more hydrophobic in Pa cyt c 4 , and the protein surface does not show the dipolar distribution of charges found in Ps cyt c 4 . The reduction potentials of the two hemes are similar in Pa cyt c 4 but differ by about 100 mV in Ps cyt c 4 . Analyses of structural models of these and other cyt c 4 proteins suggest that multiple factors contribute to the potential difference of the two hemes in these proteins, including solvent accessibility of the heme group, the distribution of surface charges, and the nature of the interdomain interface. The distinct properties of cyt c 4 proteins from closely-related Pa and Ps bacteria emphasize the importance of examining the cbb 3 /cyt c 4 redox pathway in multiple species.


  • Organizational Affiliation

    Department of Chemistry, Dartmouth College, Hanover, NH 03755, United States of America.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c4181Pseudomonas aeruginosaMutation(s): 0 
Gene Names: 
UniProt
Find proteins for P00106 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P00106 
Go to UniProtKB:  P00106
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00106
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.181 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.408α = 90
b = 61.408β = 90
c = 173.262γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building
PDB_EXTRACTdata extraction

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM113132

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-20
    Type: Initial release
  • Version 1.1: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Derived calculations, Refinement description