6PWB

Rigid body fitting of flagellin FlaB, and flagellar coiling proteins, FcpA and FcpB, into a 10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.83 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

An asymmetric sheath controls flagellar supercoiling and motility in the leptospira spirochete.

Gibson, K.H.Trajtenberg, F.Wunder, E.A.Brady, M.R.San Martin, F.Mechaly, A.Shang, Z.Liu, J.Picardeau, M.Ko, A.Buschiazzo, A.Sindelar, C.V.

(2020) Elife 9: --

  • DOI: 10.7554/eLife.53672

  • PubMed Abstract: 
  • Spirochete bacteria, including important pathogens, exhibit a distinctive means of swimming via undulations of the entire cell. Motility is powered by the rotation of supercoiled 'endoflagella' that wrap around the cell body, confined within the peri ...

    Spirochete bacteria, including important pathogens, exhibit a distinctive means of swimming via undulations of the entire cell. Motility is powered by the rotation of supercoiled 'endoflagella' that wrap around the cell body, confined within the periplasmic space. To investigate the structural basis of flagellar supercoiling, which is critical for motility, we determined the structure of native flagellar filaments from the spirochete Leptospira by integrating high-resolution cryo-electron tomography and X-ray crystallography. We show that these filaments are coated by a highly asymmetric, multi-component sheath layer, contrasting with flagellin-only homopolymers previously observed in exoflagellated bacteria. Distinct sheath proteins localize to the filament inner and outer curvatures to define the supercoiling geometry, explaining a key functional attribute of this spirochete flagellum.


    Related Citations: 
    • FcpB Is a Surface Filament Protein of the Endoflagellum Required for the Motility of the Spirochete
      Wunder, E.A.,Slamti, L.,Suwondo, D.N.,Gibson, K.H.,Shang, Z.,Sindelar, C.V.,Trajtenberg, F.,Buschiazzo, A.,Ko, A.I.,Picardeau, M.
      (2018) Front Cell Infect Microbiol 8: 130
    • A novel flagellar sheath protein, FcpA, determines filament coiling, translational motility and virulence for the Leptospira spirochete.
      Wunder, E.A.,Figueira, C.P.,Benaroudj, N.,Hu, B.,Tong, B.A.,Trajtenberg, F.,Liu, J.,Reis, M.G.,Charon, N.W.,Buschiazzo, A.,Picardeau, M.,Ko, A.I.
      (2016) Mol. Microbiol. 101: 457
    • Crystallization of FcpA from Leptospira, a novel flagellar protein that is essential for pathogenesis.
      San Martin, F.,Mechaly, A.E.,Larrieux, N.,Wunder, E.A.,Ko, A.I.,Picardeau, M.,Trajtenberg, F.,Buschiazzo, A.
      (2017) Acta Crystallogr F Struct Biol Commun 73: 123


    Organizational Affiliation

    Laboratory of Molecular and Structural Microbiology, Institut Pasteur de Montevideo, Montevideo, Uruguay.,Departament of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, United States.,Biology of Spirochetes Unit, Institut Pasteur, Paris, France.,Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.,Department of Microbial Pathogenesis, School of Medicine, Yale University, New Haven, United States.,Department of Molecular Biophysics and Biochemistry, Yale School of Medicine, New Haven, United States.,Integrative Microbiology of Zoonotic Agents, Department of Microbiology, Institut Pasteur, Paris, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Flagellin B1 (FlaB1)
AG, AH, AI, AR, BA, BB, BC, BD, BL, BM, CG, CH, BS, BT, BU, BV, BW, BX, BY, DB, DC, CL, CM, CN, CO, CP, CQ, CR, CS, CT, DG, DH, DI, DJ, DK, DL, DM, DN, DO, DW, DX, EB, EC, ED, EE, EF, EG, EH, EI, EJ, ER, ES, FA, FB, FC, FD, FE, FM, FN, EW, EX, EY, EZ, GH, GI, FR, FS, FT, FU, FV, FW, FX, HC, GM, GN, GO, GP, GQ, GR, HH, HI, HJ, HK, HL
265Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)Mutation(s): 0 
Gene Names: flaB2
Find proteins for B0SSZ5 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
Go to UniProtKB:  B0SSZ5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Flagellar coiling protein A (FcpA)
AL, AM, AU, BE, BF, BG, BH, BN, BP, CA, CB, CC, CI, CK, BZ, DD, DF, CU, CV, CW, CX, EA, DP, DQ, DR, DS, DY, EK, EL, EM, EN, ET, EV, FF, FG, FH, FI, FO, FQ, GA, GB, GC, GJ, GL, HE, GV, GW
237Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)Mutation(s): 0 
Find proteins for B0STJ8 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
Go to UniProtKB:  B0STJ8
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Flagellar coiling protein B (FcpB)
AO, BI, BJ, BK, BO, CD, CE, CF, CJ, DA, DE, CY, CZ, DT, DU, DV, DZ, EO, EP, EQ, EU, FJ, FK, FL, FP, GE, GF, GG, GK, HB, HF, GZ
221Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)Mutation(s): 0 
Find proteins for B0SR03 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
Go to UniProtKB:  B0SR03
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.83 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Library of Medicine (NIH/NLM)United StatesR01 GM 110530
National Institutes of Health/National Library of Medicine (NIH/NLM)United StatesU01 AI088752
National Institutes of Health/National Library of Medicine (NIH/NLM)United StatesR01 TW009504
National Institutes of Health/National Library of Medicine (NIH/NLM)United StatesR01 AI052473
National Institutes of Health/National Library of Medicine (NIH/NLM)United StatesR01 298 AI121207
Agencia Nacional de Investigacion e Innovacion (ANII)UruguayFCE_3_2016_1_126797
Agencia Nacional de Investigacion e Innovacion (ANII)UruguayALI_1_2014_1_4982
Agencia Nacional de Investigacion e Innovacion (ANII)UruguayFCE_3_2016_1_126797
French National Research AgencyUruguayANR-18-CE15-0027-1
French National Research AgencyUruguayANR-08-300 MIE-018

Revision History 

  • Version 1.0: 2020-03-25
    Type: Initial release