6PWB | pdb_00006pwb

Rigid body fitting of flagellin FlaB, and flagellar coiling proteins, FcpA and FcpB, into a 10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AG]7tm_2e6pwbAG1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
AB [auth CO]7tm_2e6pwbCO1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
B [auth AH]7tm_2e6pwbAH1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
CB [auth CQ]7tm_2e6pwbCQ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
CD [auth FA]7tm_2e6pwbFA1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
DB [auth CR]7tm_2e6pwbCR1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
DC [auth DW]7tm_2e6pwbDW1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
DE [auth GH]7tm_2e6pwbGH1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
EA [auth CG]7tm_2e6pwbCG1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
EB [auth CS]7tm_2e6pwbCS1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
ED [auth FC]7tm_2e6pwbFC1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
EE [auth GI]7tm_2e6pwbGI1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
EF [auth HJ]7tm_2e6pwbHJ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
FA [auth CH]7tm_2e6pwbCH1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
FB [auth CT]7tm_2e6pwbCT1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
FF [auth HK]7tm_2e6pwbHK1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
G [auth AR]7tm_2e6pwbAR1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
GF [auth HL]7tm_2e6pwbHL1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
I [auth BA]7tm_2e6pwbBA1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
J [auth BB]7tm_2e6pwbBB1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
JA [auth BS]7tm_2e6pwbBS1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
JC [auth ED]7tm_2e6pwbED1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
K [auth BC]7tm_2e6pwbBC1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
KA [auth BT]7tm_2e6pwbBT1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
KC [auth EE]7tm_2e6pwbEE1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
KE [auth FT]7tm_2e6pwbFT1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
L [auth BD]7tm_2e6pwbBD1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
LA [auth BU]7tm_2e6pwbBU1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
LC [auth EF]7tm_2e6pwbEF1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
LE [auth FU]7tm_2e6pwbFU1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
MA [auth BV]7tm_2e6pwbBV1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
ME [auth FV]7tm_2e6pwbFV1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
NA [auth BW]7tm_2e6pwbBW1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
NB [auth DG]7tm_2e6pwbDG1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
NC [auth EH]7tm_2e6pwbEH1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
NE [auth FW]7tm_2e6pwbFW1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
OB [auth DH]7tm_2e6pwbDH1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
OC [auth EI]7tm_2e6pwbEI1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
OD [auth FM]7tm_2e6pwbFM1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
OE [auth FX]7tm_2e6pwbFX1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
PB [auth DI]7tm_2e6pwbDI1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
PC [auth EJ]7tm_2e6pwbEJ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
QB [auth DJ]7tm_2e6pwbDJ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
QE [auth HC]7tm_2e6pwbHC1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
RB [auth DK]7tm_2e6pwbDK1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
SA [auth DB]7tm_2e6pwbDB1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
SB [auth DL]7tm_2e6pwbDL1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
T [auth BL]7tm_2e6pwbBL1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
TA [auth DC]7tm_2e6pwbDC1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
TD [auth EW]7tm_2e6pwbEW1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
TE [auth GM]7tm_2e6pwbGM1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
U [auth BM]7tm_2e6pwbBM1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
UB [auth DN]7tm_2e6pwbDN1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
UD [auth EX]7tm_2e6pwbEX1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
VB [auth DO]7tm_2e6pwbDO1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
VD [auth EY]7tm_2e6pwbEY1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
WD [auth EZ]7tm_2e6pwbEZ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
XA [auth CL]7tm_2e6pwbCL1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
XC [auth ER]7tm_2e6pwbER1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
XE [auth GQ]7tm_2e6pwbGQ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
YA [auth CM]7tm_2e6pwbCM1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
ZA [auth CN]7tm_2e6pwbCN1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
YE [auth GR]7tm_2e6pwbGR1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
YC [auth ES]7tm_2e6pwbES1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
WE [auth GP]7tm_2e6pwbGP1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
VE [auth GO]7tm_2e6pwbGO1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
UE [auth GN]7tm_2e6pwbGN1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
TB [auth DM]7tm_2e6pwbDM1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
PD [auth FN]7tm_2e6pwbFN1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
PA [auth BY]7tm_2e6pwbBY1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
OA [auth BX]7tm_2e6pwbBX1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
MC [auth EG]7tm_2e6pwbEG1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
JE [auth FS]7tm_2e6pwbFS1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
IE [auth FR]7tm_2e6pwbFR1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
IC [auth EC]7tm_2e6pwbEC1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
HC [auth EB]7tm_2e6pwbEB1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
GD [auth FE]7tm_2e6pwbFE1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
FD7tm_2e6pwbFD1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
EC [auth DX]7tm_2e6pwbDX1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
DF [auth HI]7tm_2e6pwbHI1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
DD [auth FB]7tm_2e6pwbFB1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
CF [auth HH]7tm_2e6pwbHH1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
C [auth AI]7tm_2e6pwbAI1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)
BB [auth CP]7tm_2e6pwbCP1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: 7tm_2ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00700Bacterial flagellin C-terminal helical region (Flagellin_C)Bacterial flagellin C-terminal helical regionFlagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].
Domain
PF00669Bacterial flagellin N-terminal helical region (Flagellin_N)Bacterial flagellin N-terminal helical region- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Flagellar coiling protein B (FcpB)- - -
Flagellar coiling protein A (FcpA)- - -
Flagellin B1 (FlaB1) -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR058173FcpBFamily
IPR058091FcpAFamily
IPR046358Flagellin, C-terminal domainDomain
IPR001029Flagellin, N-terminal domainDomain
IPR042187Flagellin, C-terminal domain, subdomain 2Homologous Superfamily
IPR001492FlagellinFamily