6PS3

XFEL beta2 AR structure by ligand exchange from Timolol to Carvedilol.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Toward G protein-coupled receptor structure-based drug design using X-ray lasers

Ishchenko, A.Stauch, B.Han, G.W.Batyuk, A.Shiriaeva, A.Li, C.Zatsepin, N.A.Weierstall, U.Liu, W.Nango, E.Nakane, T.Tanaka, R.Tono, K.Joti, Y.Iwata, S.Moraes, I.Gati, C.Cherezov, V.

(2019) Iucrj 6: 1106-1119


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Fusion protein of Beta-2 adrenergic receptor and T4 Lysozyme
A
506Enterobacteria phage T4Homo sapiens
This entity is chimeric
Mutation(s): 4 
Gene Names: e, ADRB2 (ADRB2R, B2AR)
EC: 3.2.1.17
Find proteins for D9IEF7 (Enterobacteria phage T4)
Go to UniProtKB:  D9IEF7
Find proteins for P07550 (Homo sapiens)
Go to Gene View: ADRB2
Go to UniProtKB:  P07550
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLC
Query on OLC

Download SDF File 
Download CCD File 
A
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
CVD
Query on CVD

Download SDF File 
Download CCD File 
A
(2S)-1-(8H-CARBAZOL-4-YLOXY)-3-[2-(2-METHOXYPHENOXY)ETHYLAMINO]PROPAN-2-OL
CARVEDILOL
C24 H26 N2 O4
OGHNVEJMJSYVRP-KRWDZBQOSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
OLA
Query on OLA

Download SDF File 
Download CCD File 
A
OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
 Ligand Interaction
CLR
Query on CLR

Download SDF File 
Download CCD File 
A
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 42.550α = 90.00
b = 77.440β = 90.00
c = 173.850γ = 90.00
Software Package:
Software NamePurpose
CrystFELdata reduction
PDB_EXTRACTdata extraction
CrystFELdata scaling
PHASERphasing
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR35 GM127086

Revision History 

  • Version 1.0: 2019-11-13
    Type: Initial release