6PQX

Cryo-EM structure of HzTransib/nicked TIR substrate DNA hairpin forming complex (HFC)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structures of a RAG-like transposase during cut-and-paste transposition

Liu, C.Yang, Y.Schatz, D.G.

(2019) Nature --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA-mediated transposase
A, E
497Helicoverpa zeaMutation(s): 0 
Find proteins for B0F0C5 (Helicoverpa zea)
Go to UniProtKB:  B0F0C5
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*T)-3')B,F16Helicoverpa zea
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3')C,G16Helicoverpa zea
Entity ID: 4
MoleculeChainsLengthOrganism
TIR substrate DNA transferred strandD,H32Helicoverpa zea
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, E
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited States1R01AI137079

Revision History 

  • Version 1.0: 2019-10-09
    Type: Initial release