6PB6

The E. coli class-II CAP-dependent transcription activation complex at the state 2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.29 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Visualization of two architectures in class-II CAP-dependent transcription activation

Shi, W.Jiang, Y.Deng, Y.Dong, Z.Liu, B.

(2020) PLoS Biol 18: e3000706


Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alphaA, B329Escherichia coliMutation(s): 0 
Gene Names: rpoAZ4665ECs4160
EC: 2.7.7.6
UniProt
Find proteins for P0A7Z4 (Escherichia coli (strain K12))
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaC1342Escherichia coliMutation(s): 0 
Gene Names: rpoBECS88_4448
EC: 2.7.7.6
UniProt
Find proteins for B7MIX3 (Escherichia coli O45:K1 (strain S88 / ExPEC))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta'D1407Escherichia coliMutation(s): 0 
Gene Names: rpoCZ5561ECs4911
EC: 2.7.7.6
UniProt
Find proteins for P0A8T8 (Escherichia coli O157:H7)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit omegaE91Escherichia coliMutation(s): 0 
Gene Names: rpoZECS88_4064
EC: 2.7.7.6
UniProt
Find proteins for P0A800 (Escherichia coli (strain K12))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
RNA polymerase sigma factor RpoDF628Escherichia coliMutation(s): 0 
Gene Names: rpoDaltb3067JW3039
UniProt
Find proteins for P00579 (Escherichia coli (strain K12))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
cAMP-activated global transcriptional regulator CRPG, H210Escherichia coliMutation(s): 0 
Gene Names: crpZ4718ECs4208
UniProt
Find proteins for P0ACK0 (Escherichia coli O157:H7)
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Entity ID: 7
MoleculeChainsLengthOrganismImage
SYNTHETIC NONTEMPLATE STRAND DNA (78-MER)I [auth 1]78Escherichia coli
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Entity ID: 8
MoleculeChainsLengthOrganismImage
SYNTHETIC TEMPLATE STRAND DNA (78-MER)J [auth 2]78Escherichia coli
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Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.29 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

  • Deposited Date: 2019-06-13 
  • Released Date: 2020-03-18 
  • Deposition Author(s): Liu, B., Shi, W.

Revision History  (Full details and data files)

  • Version 1.0: 2020-03-18
    Type: Initial release
  • Version 1.1: 2020-04-29
    Changes: Database references
  • Version 1.2: 2021-02-10
    Changes: Source and taxonomy