6OLG

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

  • Classification: RIBOSOME
  • Organism(s): Homo sapiens

  • Deposited: 2019-04-16 Released: 2019-06-19 
  • Deposition Author(s): Li, W., Cate, J.H.D.
  • Funding Organization(s): National Institutes of Health/National Human Genome Research Institute 

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.4 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.

Li, W.Ward, F.R.McClure, K.F.Chang, S.T.Montabana, E.Liras, S.Dullea, R.G.Cate, J.H.D.

(2019) Nat.Struct.Mol.Biol. 26: 501-509

  • DOI: 10.1038/s41594-019-0236-8
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The drug-like molecule PF-06446846 (PF846) binds the human ribosome and selectively blocks the translation of a small number of proteins by an unknown mechanism. In structures of PF846-stalled human ribosome nascent chain complexes, PF846 binds in th ...

    The drug-like molecule PF-06446846 (PF846) binds the human ribosome and selectively blocks the translation of a small number of proteins by an unknown mechanism. In structures of PF846-stalled human ribosome nascent chain complexes, PF846 binds in the ribosome exit tunnel in a eukaryotic-specific pocket formed by 28S ribosomal RNA, and alters the path of the nascent polypeptide chain. PF846 arrests the translating ribosome in the rotated state of translocation, in which the peptidyl-transfer RNA 3'-CCA end is improperly docked in the peptidyl transferase center. Selections of messenger RNAs from mRNA libraries using translation extracts reveal that PF846 can stall translation elongation, arrest termination or even enhance translation, depending on nascent chain sequence context. These results illuminate how a small molecule selectively targets translation by the human ribosome, and provides a foundation for developing small molecules that modulate the production of proteins of therapeutic interest.


    Organizational Affiliation

    Department of Molecular & Cell Biology, University of California, Berkeley, Berkeley, CA, USA.,Department of Chemistry, University of California, Berkeley, Berkeley, CA, USA. jcate@lbl.gov.,Molecular Biophysics and Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.,Pfizer Medicinal Chemistry, Pfizer Worldwide Research and Development, Cambridge, MA, USA.,Cardiovascular, Metabolic and Endocrine Disease Research Unit, Pfizer Worldwide Research and Development, Cambridge, MA, USA.,Molecular Biophysics and Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. jcate@lbl.gov.,Department of Molecular & Cell Biology, University of California, Berkeley, Berkeley, CA, USA. jcate@lbl.gov.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L8
AA
257Homo sapiensMutation(s): 0 
Gene Names: RPL8
Find proteins for P62917 (Homo sapiens)
Go to Gene View: RPL8
Go to UniProtKB:  P62917
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein SA
BA
215Homo sapiensMutation(s): 0 
Gene Names: RPSA (LAMBR, LAMR1)
Find proteins for P08865 (Homo sapiens)
Go to Gene View: RPSA
Go to UniProtKB:  P08865
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L3
AB
394Homo sapiensMutation(s): 0 
Gene Names: RPL3
Find proteins for P39023 (Homo sapiens)
Go to Gene View: RPL3
Go to UniProtKB:  P39023
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3a
BB
212Homo sapiensMutation(s): 0 
Gene Names: RPS3A (FTE1, MFTL)
Find proteins for P61247 (Homo sapiens)
Go to Gene View: RPS3A
Go to UniProtKB:  P61247
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L4
AC
363Homo sapiensMutation(s): 0 
Gene Names: RPL4 (RPL1)
Find proteins for P36578 (Homo sapiens)
Go to Gene View: RPL4
Go to UniProtKB:  P36578
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S2
BC
222Homo sapiensMutation(s): 0 
Gene Names: RPS2 (RPS4)
Find proteins for P15880 (Homo sapiens)
Go to Gene View: RPS2
Go to UniProtKB:  P15880
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L5
AD
294Homo sapiensMutation(s): 0 
Gene Names: RPL5
Find proteins for P46777 (Homo sapiens)
Go to Gene View: RPL5
Go to UniProtKB:  P46777
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L6
AE
194Homo sapiensMutation(s): 0 
Gene Names: RPL6 (TXREB1)
Find proteins for Q02878 (Homo sapiens)
Go to Gene View: RPL6
Go to UniProtKB:  Q02878
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L7
AF
234Homo sapiensMutation(s): 0 
Gene Names: RPL7
Find proteins for P18124 (Homo sapiens)
Go to Gene View: RPL7
Go to UniProtKB:  P18124
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L7a
AG
234Homo sapiensMutation(s): 0 
Gene Names: RPL7A (SURF-3, SURF3)
Find proteins for P62424 (Homo sapiens)
Go to Gene View: RPL7A
Go to UniProtKB:  P62424
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L9
AH
191Homo sapiensMutation(s): 0 
Gene Names: RPL9, RPL9P7, RPL9P8, RPL9P9
Find proteins for P32969 (Homo sapiens)
Go to Gene View: RPL9
Go to UniProtKB:  P32969
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L10
AI
211Homo sapiensMutation(s): 0 
Gene Names: RPL10 (DXS648E, QM)
Find proteins for P27635 (Homo sapiens)
Go to Gene View: RPL10
Go to UniProtKB:  P27635
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L11
AJ
169Homo sapiensMutation(s): 0 
Gene Names: RPL11
Find proteins for P62913 (Homo sapiens)
Go to Gene View: RPL11
Go to UniProtKB:  P62913
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
60S acidic ribosomal protein P0
AK
109Homo sapiensMutation(s): 0 
Gene Names: RPLP0
Find proteins for P05388 (Homo sapiens)
Go to Gene View: RPLP0
Go to UniProtKB:  P05388
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13
AL
205Homo sapiensMutation(s): 0 
Gene Names: RPL13 (BBC1)
Find proteins for P26373 (Homo sapiens)
Go to Gene View: RPL13
Go to UniProtKB:  P26373
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L14
AM
139Homo sapiensMutation(s): 0 
Gene Names: RPL14
Find proteins for P50914 (Homo sapiens)
Go to Gene View: RPL14
Go to UniProtKB:  P50914
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L15
AN
203Homo sapiensMutation(s): 0 
Gene Names: RPL15 (EC45)
Find proteins for P61313 (Homo sapiens)
Go to Gene View: RPL15
Go to UniProtKB:  P61313
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13a
AO
195Homo sapiensMutation(s): 0 
Gene Names: RPL13A
Find proteins for P40429 (Homo sapiens)
Go to Gene View: RPL13A
Go to UniProtKB:  P40429
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L17
AP
153Homo sapiensMutation(s): 0 
Gene Names: RPL17
Find proteins for P18621 (Homo sapiens)
Go to Gene View: RPL17
Go to UniProtKB:  P18621
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L18
AQ
187Homo sapiensMutation(s): 0 
Gene Names: RPL18
Find proteins for Q07020 (Homo sapiens)
Go to Gene View: RPL18
Go to UniProtKB:  Q07020
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L19
AR
181Homo sapiensMutation(s): 0 
Gene Names: RPL19
Find proteins for P84098 (Homo sapiens)
Go to Gene View: RPL19
Go to UniProtKB:  P84098
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L18a
AS
175Homo sapiensMutation(s): 0 
Gene Names: RPL18A
Find proteins for Q02543 (Homo sapiens)
Go to Gene View: RPL18A
Go to UniProtKB:  Q02543
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L21
AT
157Homo sapiensMutation(s): 0 
Gene Names: RPL21
Find proteins for P46778 (Homo sapiens)
Go to Gene View: RPL21
Go to UniProtKB:  P46778
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L22
AU
99Homo sapiensMutation(s): 0 
Gene Names: RPL22
Find proteins for P35268 (Homo sapiens)
Go to Gene View: RPL22
Go to UniProtKB:  P35268
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L23
AV
129Homo sapiensMutation(s): 0 
Find proteins for Q9BTQ7 (Homo sapiens)
Go to UniProtKB:  Q9BTQ7
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L24
AW
121Homo sapiensMutation(s): 0 
Gene Names: RPL24
Find proteins for P83731 (Homo sapiens)
Go to Gene View: RPL24
Go to UniProtKB:  P83731
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L23a
AX
117Homo sapiensMutation(s): 0 
Gene Names: RPL23A
Find proteins for P62750 (Homo sapiens)
Go to Gene View: RPL23A
Go to UniProtKB:  P62750
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L26
AY
127Homo sapiensMutation(s): 0 
Gene Names: RPL26
Find proteins for P61254 (Homo sapiens)
Go to Gene View: RPL26
Go to UniProtKB:  P61254
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27
AZ
134Homo sapiensMutation(s): 0 
Gene Names: RPL27
Find proteins for P61353 (Homo sapiens)
Go to Gene View: RPL27
Go to UniProtKB:  P61353
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27a
Aa
147Homo sapiensMutation(s): 0 
Gene Names: RPL27A
Find proteins for P46776 (Homo sapiens)
Go to Gene View: RPL27A
Go to UniProtKB:  P46776
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L29
Ab
121Homo sapiensMutation(s): 0 
Gene Names: RPL29
Find proteins for P47914 (Homo sapiens)
Go to Gene View: RPL29
Go to UniProtKB:  P47914
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L30
Ac
103Homo sapiensMutation(s): 0 
Gene Names: RPL30
Find proteins for P62888 (Homo sapiens)
Go to Gene View: RPL30
Go to UniProtKB:  P62888
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L31
Ad
106Homo sapiensMutation(s): 0 
Gene Names: RPL31
Find proteins for P62899 (Homo sapiens)
Go to Gene View: RPL31
Go to UniProtKB:  P62899
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L32
Ae
129Homo sapiensMutation(s): 0 
Gene Names: RPL32
Find proteins for P62910 (Homo sapiens)
Go to Gene View: RPL32
Go to UniProtKB:  P62910
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L35a
Af
109Homo sapiensMutation(s): 0 
Gene Names: RPL35A
Find proteins for P18077 (Homo sapiens)
Go to Gene View: RPL35A
Go to UniProtKB:  P18077
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L34
Ag
114Homo sapiensMutation(s): 0 
Gene Names: RPL34
Find proteins for P49207 (Homo sapiens)
Go to Gene View: RPL34
Go to UniProtKB:  P49207
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L35
Ah
122Homo sapiensMutation(s): 0 
Gene Names: RPL35
Find proteins for P42766 (Homo sapiens)
Go to Gene View: RPL35
Go to UniProtKB:  P42766
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36
Ai
97Homo sapiensMutation(s): 0 
Gene Names: RPL36
Find proteins for Q9Y3U8 (Homo sapiens)
Go to Gene View: RPL36
Go to UniProtKB:  Q9Y3U8
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L37
Aj
84Homo sapiensMutation(s): 0 
Gene Names: RPL37
Find proteins for P61927 (Homo sapiens)
Go to Gene View: RPL37
Go to UniProtKB:  P61927
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L38
Ak
69Homo sapiensMutation(s): 0 
Gene Names: RPL38
Find proteins for P63173 (Homo sapiens)
Go to Gene View: RPL38
Go to UniProtKB:  P63173
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L39
Al
50Homo sapiensMutation(s): 0 
Gene Names: RPL39
Find proteins for P62891 (Homo sapiens)
Go to Gene View: RPL39
Go to UniProtKB:  P62891
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L40
Am
50Homo sapiensMutation(s): 0 
Gene Names: UBA52 (UBCEP2)
Find proteins for P62987 (Homo sapiens)
Go to Gene View: UBA52
Go to UniProtKB:  P62987
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L41
An
25Homo sapiensMutation(s): 0 
Gene Names: RPL41
Find proteins for P62945 (Homo sapiens)
Go to Gene View: RPL41
Go to UniProtKB:  P62945
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36a
Ao
105Homo sapiensMutation(s): 0 
Gene Names: RPL36A (RPL44)
Find proteins for P83881 (Homo sapiens)
Go to Gene View: RPL36A
Go to UniProtKB:  P83881
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L37a
Ap
91Homo sapiensMutation(s): 0 
Gene Names: RPL37A
Find proteins for P61513 (Homo sapiens)
Go to Gene View: RPL37A
Go to UniProtKB:  P61513
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L12
Aq
138Homo sapiensMutation(s): 0 
Gene Names: RPL12
Find proteins for P30050 (Homo sapiens)
Go to Gene View: RPL12
Go to UniProtKB:  P30050
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L28
At
122Homo sapiensMutation(s): 0 
Gene Names: RPL28
Find proteins for P46779 (Homo sapiens)
Go to Gene View: RPL28
Go to UniProtKB:  P46779
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L10a
Au
217Homo sapiensMutation(s): 0 
Gene Names: RPL10A (NEDD6)
Find proteins for P62906 (Homo sapiens)
Go to Gene View: RPL10A
Go to UniProtKB:  P62906
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3
BD
220Homo sapiensMutation(s): 0 
Gene Names: RPS3
EC: 4.2.99.18
Find proteins for P23396 (Homo sapiens)
Go to Gene View: RPS3
Go to UniProtKB:  P23396
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S4, Y isoform 1
BE
257Homo sapiensMutation(s): 0 
Gene Names: RPS4Y1 (RPS4Y)
Find proteins for P22090 (Homo sapiens)
Go to Gene View: RPS4Y1
Go to UniProtKB:  P22090
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S5
BF
190Homo sapiensMutation(s): 0 
Gene Names: RPS5
Find proteins for P46782 (Homo sapiens)
Go to Gene View: RPS5
Go to UniProtKB:  P46782
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S6
BG
232Homo sapiensMutation(s): 0 
Gene Names: RPS6
Find proteins for P62753 (Homo sapiens)
Go to Gene View: RPS6
Go to UniProtKB:  P62753
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S7
BH
183Homo sapiensMutation(s): 0 
Gene Names: RPS7
Find proteins for P62081 (Homo sapiens)
Go to Gene View: RPS7
Go to UniProtKB:  P62081
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S8
BI
207Homo sapiensMutation(s): 0 
Gene Names: RPS8
Find proteins for P62241 (Homo sapiens)
Go to Gene View: RPS8
Go to UniProtKB:  P62241
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S9
BJ
179Homo sapiensMutation(s): 0 
Gene Names: RPS9
Find proteins for P46781 (Homo sapiens)
Go to Gene View: RPS9
Go to UniProtKB:  P46781
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S10
BK
98Homo sapiensMutation(s): 0 
Gene Names: RPS10
Find proteins for P46783 (Homo sapiens)
Go to Gene View: RPS10
Go to UniProtKB:  P46783
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S11
BL
153Homo sapiensMutation(s): 0 
Gene Names: RPS11
Find proteins for P62280 (Homo sapiens)
Go to Gene View: RPS11
Go to UniProtKB:  P62280
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S12
BM
120Homo sapiensMutation(s): 0 
Gene Names: RPS12
Find proteins for P25398 (Homo sapiens)
Go to Gene View: RPS12
Go to UniProtKB:  P25398
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S13
BN
149Homo sapiensMutation(s): 0 
Gene Names: RPS13
Find proteins for P62277 (Homo sapiens)
Go to Gene View: RPS13
Go to UniProtKB:  P62277
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S14
BO
136Homo sapiensMutation(s): 0 
Gene Names: RPS14
Find proteins for P62263 (Homo sapiens)
Go to Gene View: RPS14
Go to UniProtKB:  P62263
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S15
BP
120Homo sapiensMutation(s): 0 
Gene Names: RPS15 (RIG)
Find proteins for P62841 (Homo sapiens)
Go to Gene View: RPS15
Go to UniProtKB:  P62841
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S16
BQ
139Homo sapiensMutation(s): 0 
Gene Names: RPS16
Find proteins for P62249 (Homo sapiens)
Go to Gene View: RPS16
Go to UniProtKB:  P62249
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S17
BR
125Homo sapiensMutation(s): 0 
Gene Names: RPS17 (RPS17L)
Find proteins for P08708 (Homo sapiens)
Go to Gene View: RPS17
Go to UniProtKB:  P08708
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S18
BS
139Homo sapiensMutation(s): 0 
Gene Names: RPS18 (D6S218E)
Find proteins for P62269 (Homo sapiens)
Go to Gene View: RPS18
Go to UniProtKB:  P62269
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S19
BT
143Homo sapiensMutation(s): 0 
Gene Names: RPS19
Find proteins for P39019 (Homo sapiens)
Go to Gene View: RPS19
Go to UniProtKB:  P39019
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S20
BU
97Homo sapiensMutation(s): 0 
Gene Names: RPS20
Find proteins for P60866 (Homo sapiens)
Go to Gene View: RPS20
Go to UniProtKB:  P60866
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S21
BV
81Homo sapiensMutation(s): 0 
Gene Names: RPS21
Find proteins for P63220 (Homo sapiens)
Go to Gene View: RPS21
Go to UniProtKB:  P63220
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S15a
BW
129Homo sapiensMutation(s): 0 
Gene Names: RPS15A
Find proteins for P62244 (Homo sapiens)
Go to Gene View: RPS15A
Go to UniProtKB:  P62244
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S23
BX
139Homo sapiensMutation(s): 0 
Gene Names: RPS23
Find proteins for P62266 (Homo sapiens)
Go to Gene View: RPS23
Go to UniProtKB:  P62266
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S24
BY
125Homo sapiensMutation(s): 0 
Gene Names: RPS24
Find proteins for P62847 (Homo sapiens)
Go to Gene View: RPS24
Go to UniProtKB:  P62847
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S25
BZ
86Homo sapiensMutation(s): 0 
Gene Names: RPS25
Find proteins for P62851 (Homo sapiens)
Go to Gene View: RPS25
Go to UniProtKB:  P62851
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S26
Ba
97Homo sapiensMutation(s): 0 
Gene Names: RPS26
Find proteins for P62854 (Homo sapiens)
Go to Gene View: RPS26
Go to UniProtKB:  P62854
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27
Bb
80Homo sapiensMutation(s): 0 
Gene Names: RPS27 (MPS1)
Find proteins for P42677 (Homo sapiens)
Go to Gene View: RPS27
Go to UniProtKB:  P42677
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S28
Bc
62Homo sapiensMutation(s): 0 
Gene Names: RPS28
Find proteins for P62857 (Homo sapiens)
Go to Gene View: RPS28
Go to UniProtKB:  P62857
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S29
Bd
51Homo sapiensMutation(s): 0 
Gene Names: RPS29
Find proteins for P62273 (Homo sapiens)
Go to Gene View: RPS29
Go to UniProtKB:  P62273
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S30
Be
55Homo sapiensMutation(s): 0 
Gene Names: FAU
Find proteins for E9PR30 (Homo sapiens)
Go to Gene View: FAU
Go to UniProtKB:  E9PR30
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27a
Bf
73Homo sapiensMutation(s): 0 
Gene Names: RPS27A (UBA80, UBCEP1)
Find proteins for P62979 (Homo sapiens)
Go to Gene View: RPS27A
Go to UniProtKB:  P62979
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
Receptor of activated protein C kinase 1
Bg
314Homo sapiensMutation(s): 0 
Gene Names: RACK1 (GNB2L1)
Find proteins for P63244 (Homo sapiens)
Go to Gene View: RACK1
Go to UniProtKB:  P63244
Entity ID: 85
MoleculeChainsSequence LengthOrganismDetails
Cadherin-1
A
39Homo sapiensMutation(s): 0 
Gene Names: CDH1 (CDHE, UVO)
Find proteins for P12830 (Homo sapiens)
Go to Gene View: CDH1
Go to UniProtKB:  P12830
Entity ID: 7
MoleculeChainsLengthOrganism
5.8S ribosomal RNAA3157Homo sapiens
Entity ID: 8
MoleculeChainsLengthOrganism
5S ribosomal RNAA4119Homo sapiens
Entity ID: 51
MoleculeChainsLengthOrganism
28S ribosomal RNAA23612Homo sapiens
Entity ID: 52
MoleculeChainsLengthOrganism
18S ribosomal RNAB11708Homo sapiens
Entity ID: 83
MoleculeChainsLengthOrganism
tRNABv76Homo sapiens
Entity ID: 84
MoleculeChainsLengthOrganism
mRNABx16Homo sapiens
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
Aj, Ao, Ap, Ba, Bd
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A2, A3, A4, Aa, AB, Ae, AP, AY, B1, Ba, BI, Bv
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
MVM
Query on MVM

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Download CCD File 
A2
N-(3-chloropyridin-2-yl)-N-[(3R)-piperidin-3-yl]-4-(3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)benzamide
C22 H20 Cl N7 O
FDTXHWQFIXYHCL-QGZVFWFLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.4 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-04-16 
  • Released Date: 2019-06-19 
  • Deposition Author(s): Li, W., Cate, J.H.D.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesR01-GM065050

Revision History 

  • Version 1.0: 2019-06-19
    Type: Initial release