Skip to main content

 6OIF | pdb_00006oif

Cryo-EM structure of human TorsinA filament

  • Classification: HYDROLASE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2019-04-09 Released: 2019-07-24 
  • Deposition Author(s): Zheng, W., Demircioglu, F.E., Schwartz, T.U., Egelman, E.H.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 6OIF

This is version 1.3 of the entry. See complete history. 

Literature

The AAA + ATPase TorsinA polymerizes into hollow helical tubes with 8.5 subunits per turn.

Demircioglu, F.E., Zheng, W., McQuown, A.J., Maier, N.K., Watson, N., Cheeseman, I.M., Denic, V., Egelman, E.H., Schwartz, T.U.

(2019) Nat Commun 10: 3262-3262

  • DOI: https://doi.org/10.1038/s41467-019-11194-w
  • Primary Citation Related Structures: 
    6OIF

  • PubMed Abstract: 

    TorsinA is an ER-resident AAA + ATPase, whose deletion of glutamate E303 results in the genetic neuromuscular disease primary dystonia. TorsinA is an unusual AAA + ATPase that needs an external activator. Also, it likely does not thread a peptide substrate through a narrow central channel, in contrast to its closest structural homologs. Here, we examined the oligomerization of TorsinA to get closer to a molecular understanding of its still enigmatic function. We observe TorsinA to form helical filaments, which we analyzed by cryo-electron microscopy using helical reconstruction. The 4.4 Å structure reveals long hollow tubes with a helical periodicity of 8.5 subunits per turn, and an inner channel of ~ 4 nm diameter. We further show that the protein is able to induce tubulation of membranes in vitro, an observation that may reflect an entirely new characteristic of AAA + ATPases. We discuss the implications of these observations for TorsinA function.


  • Organizational Affiliation: 
    • Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.

Macromolecule Content 

  • Total Structure Weight: 827.44 kDa 
  • Atom Count: 58,275 
  • Modeled Residue Count: 7,050 
  • Deposited Residue Count: 7,050 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Torsin-1A
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y
282Homo sapiensMutation(s): 0 
Gene Names: TOR1A, DQ2, DYT1, TA, TORA
EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for O14656 (Homo sapiens)
Explore O14656 
Go to UniProtKB:  O14656
PHAROS:  O14656
GTEx:  ENSG00000136827 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14656
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP

Query on ATP



Download:Ideal Coordinates CCD File
AA [auth B]
BA [auth C]
CA [auth D]
DA [auth E]
EA [auth F]
AA [auth B],
BA [auth C],
CA [auth D],
DA [auth E],
EA [auth F],
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J],
JA [auth K],
KA [auth L],
LA [auth M],
MA [auth N],
NA [auth O],
OA [auth P],
PA [auth Q],
QA [auth R],
RA [auth S],
SA [auth T],
TA [auth U],
UA [auth V],
VA [auth W],
WA [auth X],
XA [auth X],
Z [auth A]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPIDER
MODEL REFINEMENTCoot
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM122510
National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)United StatesAR065484

Revision History  (Full details and data files)

  • Version 1.0: 2019-07-24
    Type: Initial release
  • Version 1.1: 2019-08-07
    Changes: Data collection, Database references
  • Version 1.2: 2019-12-11
    Changes: Author supporting evidence
  • Version 1.3: 2024-11-13
    Changes: Data collection, Database references, Refinement description, Structure summary