6OIF | pdb_00006oif

Cryo-EM structure of human TorsinA filament

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y	Lys	e6oifY1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
X	Lys	e6oifX1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
W	Lys	e6oifW1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
V	Lys	e6oifV1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
U	Lys	e6oifU1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
T	Lys	e6oifT1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
S	Lys	e6oifS1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
R	Lys	e6oifR1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
Q	Lys	e6oifQ1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
P	Lys	e6oifP1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
O	Lys	e6oifO1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
N	Lys	e6oifN1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
M	Lys	e6oifM1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
L	Lys	e6oifL1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
K	Lys	e6oifK1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
J	Lys	e6oifJ1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
I	Lys	e6oifI1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
H	Lys	e6oifH1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
G	Lys	e6oifG1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
F	Lys	e6oifF1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
E	Lys	e6oifE1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
D	Lys	e6oifD1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
C	Lys	e6oifC1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
B	Lys	e6oifB1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v295.2)
A	PDEase_I	e6oifA1	A: alpha arrays	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: PDEase_I	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	PF21376	Torsin-1A, C-terminal domain (TOR1A_C)	Torsin-1A, C-terminal domain	This domain is found at the C-terminal end of Torsin-1A from humans (TOR1A), an AAA+ ATPase that resides in the endoplasmic reticulum and the contiguous perinuclear space primarily in nerve cells. TOR1A needs the AAA+-like proteins Lamina-associated ...	This domain is found at the C-terminal end of Torsin-1A from humans (TOR1A), an AAA+ ATPase that resides in the endoplasmic reticulum and the contiguous perinuclear space primarily in nerve cells. TOR1A needs the AAA+-like proteins Lamina-associated protein 1 (LAP1) or Luminal domain like LAP1 (LULL1) to catalyze ATP hydrolysis. A single amino acid deletion in the domain represented in this entry is known to be at the root of primary dystonia, probably by weakening these interactions. This small domain forms a three-helix bundle [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	PF06309	Torsin (Torsin)	Torsin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	Torsin-1A	protein binding binding misfolded protein binding cytoskeletal protein binding kinesin binding ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding protein binding binding misfolded protein binding cytoskeletal protein binding kinesin binding ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding	membrane organization cellular component organization synaptic vesicle membrane organization cellular process cellular component organization or biogenesis endomembrane system organization nucleus organization organelle organization nuclear envelope organization cellular response to stimulus catabolic process response to stimulus proteasomal protein catabolic process primary metabolic process membrane organization cellular component organization synaptic vesicle membrane organization cellular process cellular component organization or biogenesis endomembrane system organization nucleus organization organelle organization nuclear envelope organization cellular response to stimulus catabolic process response to stimulus proteasomal protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process ERAD pathway cellular response to stress response to chemical response to stress metabolic process protein metabolic process macromolecule metabolic process response to endoplasmic reticulum stress protein folding biosynthetic process gene expression macromolecule biosynthetic process protein maturation nuclear membrane organization localization regulation of localization regulation of biological process protein localization to cell surface regulation of protein localization macromolecule localization biological regulation regulation of protein localization to cell surface intracellular protein localization vesicle localization establishment of organelle localization cellular localization transport establishment of vesicle localization establishment of localization organelle localization establishment of localization in cell synaptic vesicle localization synaptic vesicle transport import into cell nitrogen compound transport signaling organic hydroxy compound transport cell communication catecholamine uptake dopamine uptake involved in synaptic transmission synaptic signaling regulation of dopamine uptake involved in synaptic transmission neurotransmitter reuptake regulation of neurotransmitter uptake trans-synaptic signaling regulation of transport regulation of neurotransmitter transport cell-cell signaling neurotransmitter transport chemical synaptic transmission anterograde trans-synaptic signaling neurotransmitter uptake synaptic transmission, dopaminergic dopamine uptake cell adhesion intermediate filament-based process cytoskeleton organization intermediate filament cytoskeleton organization response to oxidative stress protein deneddylation protein modification by small protein removal macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation or removal developmental process wound healing epithelium development morphogenesis of an epithelium epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet tissue morphogenesis anatomical structure morphogenesis anatomical structure development epiboly cell migration wound healing, spreading of cells cell motility response to wounding animal gross anatomical part developmental process multicellular organismal process plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development system development positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization positive regulation of synaptic vesicle recycling synaptic vesicle cycle positive regulation of biological process regulation of synaptic vesicle recycling vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling positive regulation of endocytosis regulation of synaptic vesicle endocytosis positive regulation of cellular process positive regulation of synaptic vesicle endocytosis regulation of endocytosis synaptic vesicle endocytosis positive regulation of transport endocytosis protein localization to organelle protein localization to nucleus	cellular anatomical structure membrane membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane organelle membrane extracellular exosome cellular anatomical structure membrane membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytoplasm cytosol intracellular vesicle cytoplasmic vesicle secretory granule secretory vesicle growth cone axon cell projection distal axon neuron projection plasma membrane bounded cell projection site of polarized growth organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane cytoplasmic vesicle membrane vesicle membrane cytoskeleton membraneless organelle intracellular membraneless organelle membrane-enclosed lumen intracellular organelle lumen endoplasmic reticulum lumen organelle lumen transport vesicle synapse presynapse synaptic vesicle cell junction exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	IPR017378	Torsin 1/2	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	IPR010448	Torsin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	IPR049337	Torsin-1A, C-terminal domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y	: O14656	dystonic disorder early-onset generalized limb-onset dystonia generalized dystonia myoclonus-dystonia syndrome Parkinson disease Pseudodystonia selective IgA deficiency disease osteosarcoma psoriasis Sjogren syndrome focal dystonia lung cancer pancreatic ductal adenocarcinoma prostate carcinoma celiac disease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.