6O86

Crystal Structure of SeMet UDP-dependent glucosyltransferases (UGT) from Stevia rebaudiana in complex with UDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.799 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular Basis for Branched Steviol Glucoside Biosynthesis

Lee, S.G.Salomon, E.Yu, O.Jez, J.M.

(2019) Proc.Natl.Acad.Sci.USA --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-glycosyltransferase 76G1
A
458Stevia rebaudianaMutation(s): 0 
Gene Names: UGT76G1
EC: 2.4.1.-
Find proteins for Q6VAB4 (Stevia rebaudiana)
Go to UniProtKB:  Q6VAB4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UDP
Query on UDP

Download SDF File 
Download CCD File 
A
URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.799 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.173 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 97.982α = 90.00
b = 97.982β = 90.00
c = 90.962γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data collection
PHASERphasing
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-03-09 
  • Released Date: 2019-06-12 
  • Deposition Author(s): Lee, S.G., Jez, J.M.

Revision History 

  • Version 1.0: 2019-06-12
    Type: Initial release