6O5H

The effect of modifier structure on the activation of leukotriene A4 hydrolase aminopeptidase activity.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.219 

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This is version 1.2 of the entry. See complete history


Literature

Effect of Modifier Structure on the Activation of Leukotriene A4Hydrolase Aminopeptidase Activity.

Lee, K.H.Petruncio, G.Shim, A.Burdick, M.Zhang, Z.Shim, Y.M.Noble, S.M.Paige, M.

(2019) J Med Chem 62: 10605-10616

  • DOI: https://doi.org/10.1021/acs.jmedchem.9b00663
  • Primary Citation of Related Structures:  
    6O5H

  • PubMed Abstract: 

    Activation of the leukotriene A 4 hydrolase (LTA 4 H) aminopeptidase (AP) activity with 4-methoxydiphenylmethane (4MDM) promoted resolution of neutrophil infiltration in a murine cigarette smoke-induced model for emphysematous chronic obstructive pulmonary disease. Recently, 4-(4-benzylphenyl)thiazol-2-amine (ARM1) was published as a ligand for LTA 4 H with potential anti-inflammatory properties. To investigate the effect of modifier structure on enzyme kinetics of LTA 4 H, a series of analogues bearing structural features of ARM1 and 4MDM were synthesized using trifluoroborate Suzuki coupling reactions. Following, the 2.8 Å X-ray crystal structure of LTA 4 H complexed with 4-OMe-ARM1, a 4MDM-ARM1 hybrid molecule, was determined. Kinetic analysis showed that ARM1 and related analogues lowered affinity for the enzyme-substrate complex, resulting in a change of mechanism from hyperbolic mixed predominately catalytic activation (HMx(Sp < Ca)A) as observed for 4MDM to a predominately specific activation (HMx(Sp > Ca)A) mechanism. 4-OMe-ARM1 was then shown to dose responsively reduce LTB 4 production in human neutrophils.


  • Organizational Affiliation

    Department of Chemistry & Biochemistry , George Mason University , 10920 George Mason Circle , Manassas , Virginia 20110 , United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Leukotriene A-4 hydrolase
A, B, C
608Homo sapiensMutation(s): 0 
Gene Names: LTA4HLTA4
EC: 3.3.2.6
UniProt & NIH Common Fund Data Resources
Find proteins for P09960 (Homo sapiens)
Explore P09960 
Go to UniProtKB:  P09960
PHAROS:  P09960
GTEx:  ENSG00000111144 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09960
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.219 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 139.663α = 90
b = 139.663β = 90
c = 84.149γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
PROTEUMdata reduction
PROTEUMdata scaling
PROTEUMphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesR01HL132287

Revision History  (Full details and data files)

  • Version 1.0: 2019-12-04
    Type: Initial release
  • Version 1.1: 2019-12-25
    Changes: Database references
  • Version 1.2: 2024-03-13
    Changes: Data collection, Database references, Derived calculations