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The effect of modifier structure on the activation of leukotriene A4 hydrolase aminopeptidase activity.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295.15 50 - 80 mM magnesium formate dihydrate and 24% - 29% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.29 46.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.663 α = 90 b = 139.663 β = 90 c = 84.149 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2018-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.84 120.95 98.6 4.02 6.72 40540
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.84 2.914
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.84 120.95 40540 2150 98.6 0.2191 0.2186 0.2139 0.2286 0.2329 RANDOM 25.759
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.19 -0.37 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.073 r_dihedral_angle_3_deg 14.526 r_dihedral_angle_4_deg 14.471 r_dihedral_angle_1_deg 5.065 r_long_range_B_refined 4.514 r_long_range_B_other 4.507 r_scangle_other 3.704 r_scbond_it 2.528 r_scbond_other 2.528 r_mcangle_it 2.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.073 r_dihedral_angle_3_deg 14.526 r_dihedral_angle_4_deg 14.471 r_dihedral_angle_1_deg 5.065 r_long_range_B_refined 4.514 r_long_range_B_other 4.507 r_scangle_other 3.704 r_scbond_it 2.528 r_scbond_other 2.528 r_mcangle_it 2.108 r_mcangle_other 2.108 r_angle_other_deg 1.827 r_mcbond_it 1.337 r_mcbond_other 1.336 r_angle_refined_deg 0.951 r_chiral_restr 0.041 r_bond_refined_d 0.006 r_bond_other_d 0.005 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14572 Nucleic Acid Atoms Solvent Atoms 356 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction PROTEUM data reduction PROTEUM data scaling PROTEUM phasing