6O49

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339

Iwasaki, J.Lorimer, D.D.Vivoli, M.Harmer, N.J.Kibble, E.A.Peacock, C.S.Abendroth, J.Mayclin, S.J.Dranow, D.M.Pierce, P.G.Fox III, D.Lewis, M.Bzdyl, N.Kristensen, S.Schmidberger, J.W.Bond, C.B.Seufert, F.Schmitz, J.Norville, I.H.Myler, P.J.Holzgrabe, U.Sarkar-Tyson, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase
A, B
209Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Burkholderia pseudomallei (strain 1710b)
This entity is chimeric
Mutation(s): 0 
Gene Names: SMT3,
EC: 5.2.1.8
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12306
Find proteins for Q3JK38 (Burkholderia pseudomallei (strain 1710b))
Go to UniProtKB:  Q3JK38
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
LL7
Query on LL7

Download SDF File 
Download CCD File 
A, B
(2~{S})-~{N}-[3-oxidanylidene-3-[(3,4,5-trimethoxyphenyl)amino]propyl]-1-(phenylmethyl)sulfonyl-piperidine-2-carboxamide
C25 H33 N3 O7 S
WNVXSKRDYHCOMK-FQEVSTJZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 58.860α = 90.00
b = 33.600β = 101.21
c = 98.140γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release