6O49

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.168 
  • R-Value Observed: 0.171 

wwPDB Validation 3D Report Full Report



Literature

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339

Iwasaki, J.Lorimer, D.D.Vivoli, M.Harmer, N.J.Kibble, E.A.Peacock, C.S.Abendroth, J.Mayclin, S.J.Dranow, D.M.Pierce, P.G.Fox III, D.Lewis, M.Bzdyl, N.Kristensen, S.Schmidberger, J.W.Bond, C.B.Seufert, F.Schmitz, J.Norville, I.H.Myler, P.J.Holzgrabe, U.Sarkar-Tyson, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase
A, B
209Saccharomyces cerevisiae S288CBurkholderia pseudomallei 1710b
This entity is chimeric
Mutation(s): 0 
Gene Names: SMT3YDR510WD9719.15
EC: 5.2.1.8
Find proteins for Q3JK38 (Burkholderia pseudomallei (strain 1710b))
Go to UniProtKB:  Q3JK38
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12306
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LL7
Query on LL7

Download CCD File 
A, B
(2~{S})-~{N}-[3-oxidanylidene-3-[(3,4,5-trimethoxyphenyl)amino]propyl]-1-(phenylmethyl)sulfonyl-piperidine-2-carboxamide
C25 H33 N3 O7 S
WNVXSKRDYHCOMK-FQEVSTJZSA-N
 Ligand Interaction
EDO
Query on EDO

Download CCD File 
A, B
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.168 
  • R-Value Observed: 0.171 
  • Space Group: P 1 21 1
  • Diffraction Data DOI: 6O49 Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.86α = 90
b = 33.6β = 101.21
c = 98.14γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release