6NU2

Structural insights into unique features of the human mitochondrial ribosome recycling

  • Classification: RIBOSOME
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2019-01-30 Released: 2019-04-17 
  • Deposition Author(s): Sharma, M.R., Koripella, R.K., Agrawal, R.K.
  • Funding Organization(s): National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural insights into unique features of the human mitochondrial ribosome recycling.

Koripella, R.K.Sharma, M.R.Risteff, P.Keshavan, P.Agrawal, R.K.

(2019) Proc Natl Acad Sci U S A 116: 8283-8288

  • DOI: 10.1073/pnas.1815675116
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Mammalian mitochondrial ribosomes (mitoribosomes) are responsible for synthesizing proteins that are essential for oxidative phosphorylation (ATP generation). Despite their common ancestry with bacteria, the composition and structure of the human mit ...

    Mammalian mitochondrial ribosomes (mitoribosomes) are responsible for synthesizing proteins that are essential for oxidative phosphorylation (ATP generation). Despite their common ancestry with bacteria, the composition and structure of the human mitoribosome and its translational factors are significantly different from those of their bacterial counterparts. The mammalian mitoribosome recycling factor (RRF mt ) carries a mito-specific N terminus extension (NTE), which is necessary for the function of RRF mt Here we present a 3.9-Å resolution cryo-electron microscopic (cryo-EM) structure of the human 55S mitoribosome-RRF mt complex, which reveals α-helix and loop structures for the NTE that makes multiple mito-specific interactions with functionally critical regions of the mitoribosome. These include ribosomal RNA segments that constitute the peptidyl transferase center (PTC) and those that connect PTC with the GTPase-associated center and with mitoribosomal proteins L16 and L27. Our structure reveals the presence of a tRNA in the pe/E position and a rotation of the small mitoribosomal subunit on RRF mt binding. In addition, we observe an interaction between the pe/E tRNA and a mito-specific protein, mL64. These findings help understand the unique features of mitoribosome recycling.


    Organizational Affiliation

    Department of Biomedical Sciences, School of Public Health, State University of New York at Albany, Albany, NY.



Macromolecules

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L2, mitochondrial
D
236Homo sapiensMutation(s): 0 
Gene Names: MRPL2CGI-22
Find proteins for Q5T653 (Homo sapiens)
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PHAROS  Q5T653
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L3, mitochondrial
E
304Homo sapiensMutation(s): 0 
Gene Names: MRPL3MRL3RPML3
Find proteins for P09001 (Homo sapiens)
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PHAROS  P09001
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L4, mitochondrial
F
250Homo sapiensMutation(s): 0 
Gene Names: MRPL4CDABP0091CGI-28
Find proteins for Q9BYD3 (Homo sapiens)
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PHAROS  Q9BYD3
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L9, mitochondrial
H
95Homo sapiensMutation(s): 0 
Gene Names: MRPL9
Find proteins for Q9BYD2 (Homo sapiens)
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L10, mitochondrial
I
168Homo sapiensMutation(s): 0 
Gene Names: MRPL10MRPL8RPML8
Find proteins for Q7Z7H8 (Homo sapiens)
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PHAROS  Q7Z7H8
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L11, mitochondrial
J
140Homo sapiensMutation(s): 0 
Gene Names: MRPL11CGI-113
Find proteins for Q9Y3B7 (Homo sapiens)
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PHAROS  Q9Y3B7
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L13, mitochondrial
K
177Homo sapiensMutation(s): 0 
Gene Names: MRPL13
Find proteins for Q9BYD1 (Homo sapiens)
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L14, mitochondrial
L
115Homo sapiensMutation(s): 0 
Gene Names: MRPL14MRPL32RPML32
Find proteins for Q6P1L8 (Homo sapiens)
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PHAROS  Q6P1L8
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L15, mitochondrial
M
287Homo sapiensMutation(s): 0 
Gene Names: MRPL15HSPC145
Find proteins for Q9P015 (Homo sapiens)
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L16, mitochondrial
N
205Homo sapiensMutation(s): 0 
Gene Names: MRPL16PNAS-111
Find proteins for Q9NX20 (Homo sapiens)
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L17, mitochondrial
O
152Homo sapiensMutation(s): 0 
Gene Names: MRPL17LIP2
Find proteins for Q9NRX2 (Homo sapiens)
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L18, mitochondrial
P
138Homo sapiensMutation(s): 0 
Gene Names: MRPL18HSPC071
Find proteins for Q9H0U6 (Homo sapiens)
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L19, mitochondrial
Q
219Homo sapiensMutation(s): 0 
Gene Names: MRPL19KIAA0104MRPL15
Find proteins for P49406 (Homo sapiens)
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PHAROS  P49406
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L20, mitochondrial
R
140Homo sapiensMutation(s): 0 
Gene Names: MRPL20
Find proteins for Q9BYC9 (Homo sapiens)
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L21, mitochondrial
S
156Homo sapiensMutation(s): 0 
Gene Names: MRPL21
Find proteins for Q7Z2W9 (Homo sapiens)
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L22, mitochondrial
T
166Homo sapiensMutation(s): 0 
Gene Names: MRPL22MRPL25RPML25HSPC158
Find proteins for Q9NWU5 (Homo sapiens)
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L23, mitochondrial
U
111Homo sapiensMutation(s): 0 
Gene Names: MRPL23L23MRPRPL23L
Find proteins for Q16540 (Homo sapiens)
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PHAROS  Q16540
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L24, mitochondrial
V
202Homo sapiensMutation(s): 0 
Gene Names: MRPL24
Find proteins for Q96A35 (Homo sapiens)
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L27, mitochondrial
W
115Homo sapiensMutation(s): 0 
Gene Names: MRPL27HSPC250
Find proteins for Q9P0M9 (Homo sapiens)
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PHAROS  Q9P0M9
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L47, mitochondrial
Y
176Homo sapiensMutation(s): 0 
Gene Names: MRPL47NCM1CGI-204
Find proteins for Q9HD33 (Homo sapiens)
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L30, mitochondrial
Z
120Homo sapiensMutation(s): 0 
Gene Names: MRPL30MRPL28RPML28HSPC249
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L32, mitochondrial
0
108Homo sapiensMutation(s): 0 
Gene Names: MRPL32HSPC283
Find proteins for Q9BYC8 (Homo sapiens)
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L33, mitochondrial
1
52Homo sapiensMutation(s): 0 
Gene Names: MRPL33C2orf1
Find proteins for O75394 (Homo sapiens)
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L34, mitochondrial
2
46Homo sapiensMutation(s): 0 
Gene Names: MRPL34
Find proteins for Q9BQ48 (Homo sapiens)
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L35, mitochondrial
3
95Homo sapiensMutation(s): 0 
Gene Names: MRPL35BM-007
Find proteins for Q9NZE8 (Homo sapiens)
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PHAROS  Q9NZE8
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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L36, mitochondrial
4
36Homo sapiensMutation(s): 0 
Gene Names: MRPL36BRIP1
Find proteins for Q9P0J6 (Homo sapiens)
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PHAROS  Q9P0J6
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L37, mitochondrial
5
392Homo sapiensMutation(s): 0 
Gene Names: MRPL37MRPL2RPML2HSPC235
Find proteins for Q9BZE1 (Homo sapiens)
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PHAROS  Q9BZE1
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L38, mitochondrial
6
354Homo sapiensMutation(s): 0 
Gene Names: MRPL38HSPC262
Find proteins for Q96DV4 (Homo sapiens)
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PHAROS  Q96DV4
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Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L39, mitochondrial
7
287Homo sapiensMutation(s): 0 
Gene Names: MRPL39C21orf92MRPL5RPML5MSTP003PRED22
Find proteins for Q9NYK5 (Homo sapiens)
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PHAROS  Q9NYK5
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L40, mitochondrial
8
99Homo sapiensMutation(s): 0 
Gene Names: MRPL40NLVCFURIM
Find proteins for Q9NQ50 (Homo sapiens)
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PHAROS  Q9NQ50
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L41, mitochondrial
9
123Homo sapiensMutation(s): 0 
Gene Names: MRPL41BMRPMRPL27RPML27PIG3
Find proteins for Q8IXM3 (Homo sapiens)
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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L42, mitochondrial
a
108Homo sapiensMutation(s): 0 
Gene Names: MRPL42MRPL31MRPS32RPML31HSPC204PTD007
Find proteins for Q9Y6G3 (Homo sapiens)
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L43, mitochondrial
b
148Homo sapiensMutation(s): 0 
Gene Names: MRPL43
Find proteins for Q8N983 (Homo sapiens)
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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L44, mitochondrial
c
286Homo sapiensMutation(s): 0 
Gene Names: MRPL44
EC: 3.1.26
Find proteins for Q9H9J2 (Homo sapiens)
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L45, mitochondrial
d
171Homo sapiensMutation(s): 0 
Gene Names: MRPL45
Find proteins for Q9BRJ2 (Homo sapiens)
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Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L46, mitochondrial
e
237Homo sapiensMutation(s): 0 
Gene Names: MRPL46C15orf4LIECG2
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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L48, mitochondrial
f
146Homo sapiensMutation(s): 0 
Gene Names: MRPL48CGI-118HSPC290
Find proteins for Q96GC5 (Homo sapiens)
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PHAROS  Q96GC5
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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L49, mitochondrial
g
129Homo sapiensMutation(s): 0 
Gene Names: MRPL49C11orf4NOF1OK/SW-cl.67
Find proteins for Q13405 (Homo sapiens)
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PHAROS  Q13405
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Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L50, mitochondrial
h
103Homo sapiensMutation(s): 0 
Gene Names: MRPL50
Find proteins for Q8N5N7 (Homo sapiens)
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L51, mitochondrial
i
97Homo sapiensMutation(s): 0 
Gene Names: MRPL51MRP64CDA09HSPC241
Find proteins for Q4U2R6 (Homo sapiens)
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L53, mitochondrial
k
84Homo sapiensMutation(s): 0 
Gene Names: MRPL53
Find proteins for Q96EL3 (Homo sapiens)
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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L54, mitochondrial
l
23Homo sapiensMutation(s): 0 
Gene Names: MRPL54
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Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L55, mitochondrial
m
45Homo sapiensMutation(s): 0 
Gene Names: MRPL55UNQ5835/PRO19675
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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein 63, mitochondrial
o
94Homo sapiensMutation(s): 0 
Gene Names: MRPL57MRP63
Find proteins for Q9BQC6 (Homo sapiens)
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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
Peptidyl-tRNA hydrolase ICT1, mitochondrial
p
156Homo sapiensMutation(s): 0 
Gene Names: MRPL58DS1ICT1
EC: 3.1.1.29
Find proteins for Q14197 (Homo sapiens)
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PHAROS  Q14197
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
Growth arrest and DNA damage-inducible proteins-interacting protein 1
q
128Homo sapiensMutation(s): 0 
Gene Names: GADD45GIP1MRPL59PLINP1PRG6
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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein S18a, mitochondrial
r
162Homo sapiensMutation(s): 0 
Gene Names: MRPS18A
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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein S30, mitochondrial
s
390Homo sapiensMutation(s): 0 
Gene Names: MRPS30PDCD9BM-047
Find proteins for Q9NP92 (Homo sapiens)
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Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
Unknown protein/protein extension
t
28Homo sapiensMutation(s): 0 
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Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
Ribosome-recycling factor, mitochondrial
z
204Homo sapiensMutation(s): 0 
Gene Names: MRRF
Find proteins for Q96E11 (Homo sapiens)
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Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S2, mitochondrial
AB
217Homo sapiensMutation(s): 0 
Gene Names: MRPS2CGI-91
Find proteins for Q9Y399 (Homo sapiens)
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Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S24, mitochondrial
AC
132Homo sapiensMutation(s): 0 
Gene Names: MRPS24HSPC335
Find proteins for Q96EL2 (Homo sapiens)
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Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S5, mitochondrial
AD
343Homo sapiensMutation(s): 0 
Gene Names: MRPS5
Find proteins for P82675 (Homo sapiens)
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Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S6, mitochondrial
AE
122Homo sapiensMutation(s): 0 
Gene Names: MRPS6C21orf101RPMS6
Find proteins for P82932 (Homo sapiens)
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Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S7, mitochondrial
AF
208Homo sapiensMutation(s): 0 
Gene Names: MRPS7
Find proteins for Q9Y2R9 (Homo sapiens)
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Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S9, mitochondrial
AG
326Homo sapiensMutation(s): 0 
Gene Names: MRPS9RPMS9
Find proteins for P82933 (Homo sapiens)
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PHAROS  P82933
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Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S10, mitochondrial
AH
122Homo sapiensMutation(s): 0 
Gene Names: MRPS10MSTP040
Find proteins for P82664 (Homo sapiens)
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PHAROS  P82664
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Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S11, mitochondrial
AI
136Homo sapiensMutation(s): 0 
Gene Names: MRPS11RPMS11HCC2
Find proteins for P82912 (Homo sapiens)
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PHAROS  P82912
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Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S12, mitochondrial
AJ
108Homo sapiensMutation(s): 0 
Gene Names: MRPS12RPMS12RPSM12
Find proteins for O15235 (Homo sapiens)
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PHAROS  O15235
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Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S14, mitochondrial
AK
101Homo sapiensMutation(s): 0 
Gene Names: MRPS14
Find proteins for O60783 (Homo sapiens)
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PHAROS  O60783
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Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S15, mitochondrial
AL
164Homo sapiensMutation(s): 0 
Gene Names: MRPS15RPMS15DC37
Find proteins for P82914 (Homo sapiens)
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PHAROS  P82914
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Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S16, mitochondrial
AM
116Homo sapiensMutation(s): 0 
Gene Names: MRPS16RPMS16CGI-132
Find proteins for Q9Y3D3 (Homo sapiens)
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PHAROS  Q9Y3D3
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Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S17, mitochondrial
AN
107Homo sapiensMutation(s): 0 
Gene Names: MRPS17RPMS17HSPC011
Find proteins for Q9Y2R5 (Homo sapiens)
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Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S18b, mitochondrial
AO
185Homo sapiensMutation(s): 0 
Gene Names: MRPS18BC6orf14HSPC183PTD017
Find proteins for Q9Y676 (Homo sapiens)
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PHAROS  Q9Y676
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Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S18c, mitochondrial
AP
96Homo sapiensMutation(s): 0 
Gene Names: MRPS18CCGI-134
Find proteins for Q9Y3D5 (Homo sapiens)
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PHAROS  Q9Y3D5
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Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S21, mitochondrial
AQ
86Homo sapiensMutation(s): 0 
Gene Names: MRPS21RPMS21MDS016
Find proteins for P82921 (Homo sapiens)
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PHAROS  P82921
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Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S22, mitochondrial
AR
242Homo sapiensMutation(s): 0 
Gene Names: MRPS22C3orf5RPMS22GK002
Find proteins for P82650 (Homo sapiens)
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PHAROS  P82650
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Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S23, mitochondrial
AS
126Homo sapiensMutation(s): 0 
Gene Names: MRPS23CGI-138HSPC329
Find proteins for Q9Y3D9 (Homo sapiens)
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PHAROS  Q9Y3D9
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Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S25, mitochondrial
AT
162Homo sapiensMutation(s): 0 
Gene Names: MRPS25RPMS25
Find proteins for P82663 (Homo sapiens)
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PHAROS  P82663
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Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S26, mitochondrial
AU
173Homo sapiensMutation(s): 0 
Gene Names: MRPS26C20orf193RPMS13
Find proteins for Q9BYN8 (Homo sapiens)
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PHAROS  Q9BYN8
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Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S27, mitochondrial
AV
365Homo sapiensMutation(s): 0 
Gene Names: MRPS27KIAA0264
Find proteins for Q92552 (Homo sapiens)
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PHAROS  Q92552
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Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S28, mitochondrial
AW
97Homo sapiensMutation(s): 0 
Gene Names: MRPS28MRPS35HSPC007
Find proteins for Q9Y2Q9 (Homo sapiens)
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PHAROS  Q9Y2Q9
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Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S29, mitochondrial
AX
348Homo sapiensMutation(s): 0 
Gene Names: DAP3MRPS29
Find proteins for P51398 (Homo sapiens)
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PHAROS  P51398
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Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S31, mitochondrial
AY
108Homo sapiensMutation(s): 0 
Gene Names: MRPS31IMOGN38
Find proteins for Q92665 (Homo sapiens)
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PHAROS  Q92665
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Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S33, mitochondrial
AZ
87Homo sapiensMutation(s): 0 
Gene Names: MRPS33CGI-139PTD003
Find proteins for Q9Y291 (Homo sapiens)
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PHAROS  Q9Y291
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Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S34, mitochondrial
A0
208Homo sapiensMutation(s): 0 
Gene Names: MRPS34
Find proteins for P82930 (Homo sapiens)
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PHAROS  P82930
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Entity ID: 83
MoleculeChainsSequence LengthOrganismDetails
28S ribosomal protein S35, mitochondrial
A1
272Homo sapiensMutation(s): 0 
Gene Names: MRPS35MRPS28HDCMD11PMDS023PSEC0213
Find proteins for P82673 (Homo sapiens)
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PHAROS  P82673
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Entity ID: 84
MoleculeChainsSequence LengthOrganismDetails
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
A2
116Homo sapiensMutation(s): 0 
Gene Names: CHCHD1C10orf34MRPS37
Find proteins for Q96BP2 (Homo sapiens)
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PHAROS  Q96BP2
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Entity ID: 85
MoleculeChainsSequence LengthOrganismDetails
Aurora kinase A-interacting protein
A3
69Homo sapiensMutation(s): 0 
Gene Names: AURKAIP1AIPAKIPMRPS38
Find proteins for Q9NWT8 (Homo sapiens)
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PHAROS  Q9NWT8
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Entity ID: 86
MoleculeChainsSequence LengthOrganismDetails
Pentatricopeptide repeat domain-containing protein 3, mitochondrial
A4
474Homo sapiensMutation(s): 0 
Gene Names: PTCD3
Find proteins for Q96EY7 (Homo sapiens)
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PHAROS  Q96EY7
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L28, mitochondrial
X
243Homo sapiensMutation(s): 0 
Gene Names: MRPL28MAAT1
Find proteins for Q13084 (Homo sapiens)
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PHAROS  Q13084
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
39S ribosomal protein L52, mitochondrial
j
85Homo sapiensMutation(s): 0 
Gene Names: MRPL52
Find proteins for Q86TS9 (Homo sapiens)
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PHAROS  Q86TS9
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Entity ID: 1
MoleculeChainsLengthOrganism
16S rRNAA1472Homo sapiens

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Entity ID: 2
MoleculeChainsLengthOrganism
mt-tRNAValB56Homo sapiens
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Entity ID: 54
MoleculeChainsLengthOrganism
E-site tRNAu2Homo sapiens

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Entity ID: 56
MoleculeChainsLengthOrganism
12S rRNAAA923Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download CCD File 
0, 4, AB, AO, AP, AT, r
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
A, AA, M, g
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)United StatesR01 GM61576
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM 32734

Revision History 

  • Version 1.0: 2019-04-17
    Type: Initial release
  • Version 1.1: 2019-04-24
    Changes: Data collection, Database references
  • Version 1.2: 2019-05-08
    Changes: Data collection, Database references
  • Version 1.3: 2019-12-11
    Changes: Author supporting evidence