Structural insights into unique features of the human mitochondrial ribosome recycling
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth K] | SCOP2 Family | Ribosomal protein L13 | 8100459 | 4003623 | SCOP2 (2022-06-29) |
| I [auth K] | SCOP2 Superfamily | Ribosomal protein L13 | 8100460 | 3001134 | SCOP2 (2022-06-29) |
| DC [auth A0] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8091481 | 3000334 | SCOP2B (2022-06-29) |
| BC [auth AY] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S31-like | 8090914 | 3002471 | SCOP2B (2022-06-29) |
| UB [auth AR] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S22-like | 8051932 | 3002074 | SCOP2B (2022-06-29) |
| TB [auth AQ] | SCOP2B Superfamily | Ribosomal protein S21 | 8053089 | 3002159 | SCOP2B (2022-06-29) |
| NB [auth AK] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052599 | 3000068 | SCOP2B (2022-06-29) |
| MB [auth AJ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095431 | 3000135 | SCOP2B (2022-06-29) |
| LB [auth AI] | SCOP2B Superfamily | Translational machinery components | 8098948 | 3000571 | SCOP2B (2022-06-29) |
| EB [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063850 | 3001397 | SCOP2B (2022-06-29) |
| CB [auth z] | SCOP2 Family | Ribosome recycling factor, RRF | 8100391 | 4001418 | SCOP2 (2022-06-29) |
| CB [auth z] | SCOP2 Superfamily | Ribosome recycling factor, RRF | 8100392 | 3001524 | SCOP2 (2022-06-29) |
| E [auth F] | SCOP2B Superfamily | Ribosomal protein L4 | 8080706 | 3001146 | SCOP2B (2022-06-29) |
| HA [auth 9] | SCOP2B Superfamily | Mitochondrial ribosomal protein L27-like | 8053893 | 3002240 | SCOP2B (2022-06-29) |
| CA [auth 4] | SCOP2B Superfamily | Ribosomal protein L36 | 8083324 | 3001346 | SCOP2B (2022-06-29) |
| Z [auth 1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8075050 | 3001320 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8033689 | 3000995 | SCOP2B (2022-06-29) |
| J [auth L] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072072 | 3000433 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth K] | C2 | e6nu2K1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| HC [auth A4] | MDN1_4th | e6nu2A41 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: MDN1_4th | ECOD (v294.1) |
| GC [auth A3] | C2 | e6nu2A31 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| FC [auth A2] | C2 | e6nu2A21 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| EC [auth A1] | C2 | e6nu2A11 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| DC [auth A0] | C2 | e6nu2A01 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| CC [auth AZ] | C2 | e6nu2AZ1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| BC [auth AY] | C2 | e6nu2AY1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| H [auth J] | C2 | e6nu2J1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| AC [auth AX] | C2 | e6nu2AX1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| ZB [auth AW] | C2 | e6nu2AW1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| YB [auth AV] | C2 | e6nu2AV1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| XB [auth AU] | C2 | e6nu2AU1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| WB [auth AT] | C2 | e6nu2AT1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| VB [auth AS] | C2 | e6nu2AS1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| UB [auth AR] | C2 | e6nu2AR1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| TB [auth AQ] | C2 | e6nu2AQ1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| SB [auth AP] | C2 | e6nu2AP1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| RB [auth AO] | C2 | e6nu2AO1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| G [auth I] | C2 | e6nu2I1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| QB [auth AN] | C2 | e6nu2AN1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| PB [auth AM] | C2 | e6nu2AM1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| OB [auth AL] | C2 | e6nu2AL1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| NB [auth AK] | C2 | e6nu2AK1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| MB [auth AJ] | C2 | e6nu2AJ1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| LB [auth AI] | C2 | e6nu2AI1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| KB [auth AH] | C2 | e6nu2AH1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| JB [auth AG] | C2 | e6nu2AG1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| IB [auth AF] | C2 | e6nu2AF1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| HB [auth AE] | C2 | e6nu2AE1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| F [auth H] | C2 | e6nu2H1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| GB [auth AD] | C2 | e6nu2AD1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| FB [auth AC] | C2 | e6nu2AC1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| EB [auth AB] | C2 | e6nu2AB1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| CB [auth z] | C2 | e6nu2z1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| ZA [auth s] | C2 | e6nu2s1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| YA [auth r] | C2 | e6nu2r1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| XA [auth q] | C2 | e6nu2q1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| E [auth F] | Ald_deCOase | e6nu2F1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ald_deCOase | ECOD (v294.1) |
| WA [auth p] | C2 | e6nu2p1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| VA [auth o] | C2 | e6nu2o1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| UA [auth m] | C2 | e6nu2m1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| SA [auth k] | C2 | e6nu2k1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| RA [auth j] | C2 | e6nu2j1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| QA [auth i] | C2 | e6nu2i1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| PA [auth h] | YscJ_FliF | e6nu2h1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Family A G protein-coupled receptor-like | F: YscJ_FliF | ECOD (v294.1) |
| OA [auth g] | C2 | e6nu2g1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| NA [auth f] | C2 | e6nu2f1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| D [auth E] | C2 | e6nu2E1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| MA [auth e] | C2 | e6nu2e1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| LA [auth d] | C2 | e6nu2d1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| KA [auth c] | C2 | e6nu2c1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| JA [auth b] | C2 | e6nu2b1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| IA [auth a] | C2 | e6nu2a1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| HA [auth 9] | C2 | e6nu291 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| GA [auth 8] | C2 | e6nu281 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| FA [auth 7] | AAA_lid_3 | e6nu271 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Family A G protein-coupled receptor-like | F: AAA_lid_3 | ECOD (v294.1) |
| EA [auth 6] | C2 | e6nu261 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| DA [auth 5] | C2 | e6nu251 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| C [auth D] | C2 | e6nu2D1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| CA [auth 4] | C2 | e6nu241 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| BA [auth 3] | YscJ_FliF | e6nu231 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Family A G protein-coupled receptor-like | F: YscJ_FliF | ECOD (v294.1) |
| AA [auth 2] | C2 | e6nu221 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| Z [auth 1] | C2 | e6nu211 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| Y [auth 0] | C2 | e6nu201 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| X [auth Z] | C2 | e6nu2Z1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| W [auth Y] | C2 | e6nu2Y1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| V [auth X] | C2 | e6nu2X1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| U [auth W] | C2 | e6nu2W1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| T [auth V] | C2 | e6nu2V1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| S [auth U] | C2 | e6nu2U1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| R [auth T] | C2 | e6nu2T1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| Q [auth S] | C2 | e6nu2S1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| P [auth R] | YscJ_FliF | e6nu2R1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Family A G protein-coupled receptor-like | F: YscJ_FliF | ECOD (v294.1) |
| O [auth Q] | C2 | e6nu2Q1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| N [auth P] | C2 | e6nu2P1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| M [auth O] | C2 | e6nu2O1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| L [auth N] | C2 | e6nu2N1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| K [auth M] | C2 | e6nu2M1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
| J [auth L] | C2 | e6nu2L1 | A: a/b three-layered sandwiches | X: PriB N-terminal domain-like | H: Aconitase iron-sulfur domain | T: Aconitase iron-sulfur domain | F: C2 | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth K] | PF10780 | 39S ribosomal protein L53/MRP-L53 (MRP_L53) | 39S ribosomal protein L53/MRP-L53 | - | Family |
| I [auth K] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| HC [auth A4] | PF13812 | Pentatricopeptide repeat domain (PPR_3) | Pentatricopeptide repeat domain | - | Repeat |
| HC [auth A4] | PF22330 | Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR) | Small ribosomal subunit protein mS39, PPR | - | Repeat |
| GC [auth A3] | PF08213 | Mitochondrial mRNA-processing protein COX24, C-terminal (COX24_C) | Mitochondrial mRNA-processing protein COX24, C-terminal | This domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is ... | Domain |
| FC [auth A2] | PF06747 | CHCH domain (CHCH) | CHCH domain | we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ... | Domain |
| EC [auth A1] | PF10213 | Mitochondrial ribosomal subunit protein (MRP-S28) | Mitochondrial ribosomal subunit protein | - | Family |
| DC [auth A0] | PF16053 | Mitochondrial 28S ribosomal protein S34 (MRP-S34) | Mitochondrial 28S ribosomal protein S34 | - | Family |
| CC [auth AZ] | PF08293 | Mitochondrial ribosomal subunit S27 (MRP-S33) | Mitochondrial ribosomal subunit S27 | - | Family |
| BC [auth AY] | PF15433 | Mitochondrial 28S ribosomal protein S31 (MRP-S31) | Mitochondrial 28S ribosomal protein S31 | - | Family |
| H [auth J] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| H [auth J] | PF18699 | Mitoribosomal protein mL52 (MRPL52) | Mitoribosomal protein mL52 | - | Family |
| H [auth J] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| AC [auth AX] | PF10236 | Mitochondrial ribosomal death-associated protein 3 (DAP3) | Mitochondrial ribosomal death-associated protein 3 | - | Family |
| ZB [auth AW] | PF10246 | Mitochondrial ribosomal protein MRP-S35 (MRP-S35) | Mitochondrial ribosomal protein MRP-S35 | This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomencla ... | Domain |
| YB [auth AV] | PF10037 | Mitochondrial 28S ribosomal protein S27 (MRP-S27) | Mitochondrial 28S ribosomal protein S27 | - | Repeat |
| XB [auth AU] | PF14943 | Mitochondrial ribosome subunit S26 (MRP-S26) | Mitochondrial ribosome subunit S26 | - | Family |
| WB [auth AT] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
| VB [auth AS] | PF10484 | Mitochondrial ribosomal protein S23 (MRP-S23) | Mitochondrial ribosomal protein S23 | - | Family |
| UB [auth AR] | PF10245 | Mitochondrial 28S ribosomal protein S22 (MRP-S22) | Mitochondrial 28S ribosomal protein S22 | - | Family |
| TB [auth AQ] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
| SB [auth AP] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| RB [auth AO] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| G [auth I] | PF10244 | Mitochondrial ribosomal subunit (MRP-L51) | Mitochondrial ribosomal subunit | - | Family |
| G [auth I] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| QB [auth AN] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| PB [auth AM] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| OB [auth AL] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| NB [auth AK] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| MB [auth AJ] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| LB [auth AI] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| KB [auth AH] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| JB [auth AG] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| IB [auth AF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| HB [auth AE] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| F [auth H] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| F [auth H] | PF25131 | Large ribosomal subunit protein bL9m N-terminal domain (bL9m_N) | Large ribosomal subunit protein bL9m N-terminal domain | This is a presumed domain found at the very N-terminal of Large ribosomal subunit protein bL9m from animals, a structural component of the large subunit of the ribosome. According to structure predictions, it may consist in a hairpin with two beta-sh ... | Domain |
| F [auth H] | PF10501 | Ribosomal subunit 39S (Ribosomal_L50) | Ribosomal subunit 39S | The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ... | Domain |
| GB [auth AD] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| GB [auth AD] | PF21251 | Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N) | Small ribosomal subunit protein uS5m, N-terminal | This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ... | Domain |
| GB [auth AD] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| FB [auth AC] | PF14955 | Mitochondrial ribosome subunit S24 (MRP-S24) | Mitochondrial ribosome subunit S24 | - | Family |
| EB [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| E [auth F] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| E [auth F] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| D [auth E] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| D [auth E] | PF11788 | 39S mitochondrial ribosomal protein L46 (MRP-L46) | 39S mitochondrial ribosomal protein L46 | - | Family |
| HA [auth 9] | PF09809 | Mitochondrial ribosomal protein L27 (MRP-L27) | Mitochondrial ribosomal protein L27 | - | Family |
| GA [auth 8] | PF09812 | Mitochondrial ribosomal protein L28 (MRP-L28) | Mitochondrial ribosomal protein L28 | - | Family |
| EA [auth 6] | PF01161 | Phosphatidylethanolamine-binding protein (PBP) | Phosphatidylethanolamine-binding protein | Domain | |
| DA [auth 5] | PF07147 | Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9) | Mitochondrial 28S ribosomal protein S30 (PDCD9) | - | Family |
| C [auth D] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| C [auth D] | PF04280 | Tim44-like domain (Tim44) | Tim44-like domain | Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ... | Domain |
| C [auth D] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| CA [auth 4] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| BA [auth 3] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| AA [auth 2] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| Z [auth 1] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| Y [auth 0] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| X [auth Z] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| X [auth Z] | PF01765 | Ribosome recycling factor (RRF) | Ribosome recycling factor | The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ... | Domain |
| W [auth Y] | PF06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47) | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) | - | Family |
| V [auth X] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| U [auth W] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| T [auth V] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| T [auth V] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| S [auth U] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| R [auth T] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| Q [auth S] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| P [auth R] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| P [auth R] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| O [auth Q] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| N [auth P] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| M [auth O] | PF14978 | Mitochondrial ribosome protein 63 (MRP-63) | Mitochondrial ribosome protein 63 | - | Family |
| M [auth O] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| L [auth N] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| K [auth M] | PF09776 | Mitochondrial ribosomal protein L55 (Mitoc_L55) | Mitochondrial ribosomal protein L55 | - | Family |
| K [auth M] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| J [auth L] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |














